##gff-version 3
##sequence-region NC_011898 1 14790
# conversion-by bp_genbank2gff3.pl
# organism Ruminiclostridium cellulolyticum H10
# Note Ruminiclostridium cellulolyticum H10, complete sequence.
# date 04-FEB-2020
NC_011898	GenBank	region	1	14790	.	+	1	ID=NC_011898;Dbxref=BioProject:PRJNA224116,taxon:394503;Name=NC_011898;Note=Ruminiclostridium cellulolyticum H10%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 3,537 CDSs (total) :: 3,447 Genes (coding) :: 3,334 CDSs (with protein) :: 3,334 Genes (RNA) :: 90 rRNAs :: 8,8,8 (5S,16S,23S) complete rRNAs :: 8,8,8 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 3%2C537 CDSs (total) :: 3%2C447 Genes (coding) :: 3%2C334 CDSs (with protein) :: 3%2C334 Genes (RNA) :: 90 rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) complete rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;culture_collection=ATCC:35319;date=04-FEB-2020;mol_type=genomic DNA;organism=Ruminiclostridium cellulolyticum H10;strain=H10;type_material=type strain of Ruminiclostridium cellulolyticum
NC_011898	GenBank	gene	1	456	.	-	1	ID=CCEL_RS10665;Name=tnpA;locus_tag=CCEL_RS10665;old_locus_tag=Ccel_2108
NC_011898	GenBank	mRNA	1	456	.	-	1	ID=CCEL_RS10665.t01;Parent=CCEL_RS10665
NC_011898	GenBank	CDS	1	456	.	-	1	ID=CCEL_RS10665.p01;Parent=CCEL_RS10665.t01;Name=tnpA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816675.1;locus_tag=CCEL_RS10665;old_locus_tag=Ccel_2108;product=IS200/IS605 family transposase;protein_id=WP_015926613.1;transl_table=11;translation=length.151
NC_011898	GenBank	exon	1	456	.	-	1	Parent=CCEL_RS10665.t01
NC_011898	GenBank	gene	718	3153	.	-	1	ID=CCEL_RS10670;Name=CCEL_RS10670;old_locus_tag=Ccel_2109
NC_011898	GenBank	mRNA	718	3153	.	-	1	ID=CCEL_RS10670.t01;Parent=CCEL_RS10670
NC_011898	GenBank	CDS	718	3153	.	-	1	ID=CCEL_RS10670.p01;Parent=CCEL_RS10670.t01;Name=CCEL_RS10670;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014314044.1;old_locus_tag=Ccel_2109;product=glycosyl transferase;protein_id=WP_015925554.1;transl_table=11;translation=length.811
NC_011898	GenBank	exon	718	3153	.	-	1	Parent=CCEL_RS10670.t01
NC_011898	GenBank	gene	3888	4715	.	-	1	ID=CCEL_RS10675;Name=CCEL_RS10675;old_locus_tag=Ccel_2110
NC_011898	GenBank	mRNA	3888	4715	.	-	1	ID=CCEL_RS10675.t01;Parent=CCEL_RS10675
NC_011898	GenBank	CDS	3888	4715	.	-	1	ID=CCEL_RS10675.p01;Parent=CCEL_RS10675.t01;Name=CCEL_RS10675;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015925555.1;old_locus_tag=Ccel_2110;product=carbohydrate ABC transporter permease;protein_id=WP_015925555.1;transl_table=11;translation=length.275
NC_011898	GenBank	exon	3888	4715	.	-	1	Parent=CCEL_RS10675.t01
NC_011898	GenBank	gene	4702	5622	.	-	1	ID=CCEL_RS10680;Name=CCEL_RS10680;old_locus_tag=Ccel_2111
NC_011898	GenBank	mRNA	4702	5622	.	-	1	ID=CCEL_RS10680.t01;Parent=CCEL_RS10680
NC_011898	GenBank	CDS	4702	5622	.	-	1	ID=CCEL_RS10680.p01;Parent=CCEL_RS10680.t01;Name=CCEL_RS10680;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004622110.1;old_locus_tag=Ccel_2111;product=sugar ABC transporter permease;protein_id=WP_015925556.1;transl_table=11;translation=length.306
NC_011898	GenBank	exon	4702	5622	.	-	1	Parent=CCEL_RS10680.t01
NC_011898	GenBank	gene	5729	7078	.	-	1	ID=CCEL_RS10685;Name=CCEL_RS10685;old_locus_tag=Ccel_2112
NC_011898	GenBank	mRNA	5729	7078	.	-	1	ID=CCEL_RS10685.t01;Parent=CCEL_RS10685
NC_011898	GenBank	CDS	5729	7078	.	-	1	ID=CCEL_RS10685.p01;Parent=CCEL_RS10685.t01;Name=CCEL_RS10685;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015925557.1;old_locus_tag=Ccel_2112;product=extracellular solute-binding protein;protein_id=WP_015925557.1;transl_table=11;translation=length.449
NC_011898	GenBank	exon	5729	7078	.	-	1	Parent=CCEL_RS10685.t01
NC_011898	GenBank	gene	7414	9030	.	-	1	ID=CCEL_RS10690;Name=CCEL_RS10690;old_locus_tag=Ccel_2113
NC_011898	GenBank	mRNA	7414	9030	.	-	1	ID=CCEL_RS10690.t01;Parent=CCEL_RS10690
NC_011898	GenBank	CDS	7414	9030	.	-	1	ID=CCEL_RS10690.p01;Parent=CCEL_RS10690.t01;Name=CCEL_RS10690;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020813888.1;old_locus_tag=Ccel_2113;product=response regulator transcription factor;protein_id=WP_015925558.1;transl_table=11;translation=length.538
NC_011898	GenBank	exon	7414	9030	.	-	1	Parent=CCEL_RS10690.t01
NC_011898	GenBank	gene	9008	10891	.	-	1	ID=CCEL_RS10695;Name=CCEL_RS10695;old_locus_tag=Ccel_2114
NC_011898	GenBank	mRNA	9008	10891	.	-	1	ID=CCEL_RS10695.t01;Parent=CCEL_RS10695
NC_011898	GenBank	CDS	9008	10891	.	-	1	ID=CCEL_RS10695.p01;Parent=CCEL_RS10695.t01;Name=CCEL_RS10695;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020813889.1;old_locus_tag=Ccel_2114;product=sensor histidine kinase;protein_id=WP_015925559.1;transl_table=11;translation=length.627
NC_011898	GenBank	exon	9008	10891	.	-	1	Parent=CCEL_RS10695.t01
NC_011898	GenBank	gene	10946	12244	.	-	1	ID=CCEL_RS10700;Name=CCEL_RS10700;old_locus_tag=Ccel_2115
NC_011898	GenBank	mRNA	10946	12244	.	-	1	ID=CCEL_RS10700.t01;Parent=CCEL_RS10700
NC_011898	GenBank	CDS	10946	12244	.	-	1	ID=CCEL_RS10700.p01;Parent=CCEL_RS10700.t01;Name=CCEL_RS10700;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014314050.1;old_locus_tag=Ccel_2115;product=extracellular solute-binding protein;protein_id=WP_015925560.1;transl_table=11;translation=length.432
NC_011898	GenBank	exon	10946	12244	.	-	1	Parent=CCEL_RS10700.t01
NC_011898	GenBank	gene	12445	14790	.	-	1	ID=CCEL_RS10705;Name=CCEL_RS10705;old_locus_tag=Ccel_2116
NC_011898	GenBank	mRNA	12445	14790	.	-	1	ID=CCEL_RS10705.t01;Parent=CCEL_RS10705
NC_011898	GenBank	CDS	12445	14790	.	-	1	ID=CCEL_RS10705.p01;Parent=CCEL_RS10705.t01;Name=CCEL_RS10705;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020813891.1;old_locus_tag=Ccel_2116;product=AAA domain-containing protein;protein_id=WP_015925561.1;transl_table=11;translation=length.781
NC_011898	GenBank	exon	12445	14790	.	-	1	Parent=CCEL_RS10705.t01