##gff-version 3
##sequence-region NC_006347 1 10144
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	10144	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	1446	.	+	1	ID=BF_RS21505;Name=BF_RS21505;old_locus_tag=BF4504
NC_006347	GenBank	mRNA	1	1446	.	+	1	ID=BF_RS21505.t01;Parent=BF_RS21505
NC_006347	GenBank	CDS	1	1446	.	+	1	ID=BF_RS21505.p01;Parent=BF_RS21505.t01;Name=BF_RS21505;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005803862.1;old_locus_tag=BF4504;product=lipopolysaccharide biosynthesis protein;protein_id=WP_005814097.1;transl_table=11;translation=length.481
NC_006347	GenBank	exon	1	1446	.	+	1	Parent=BF_RS21505.t01
NC_006347	GenBank	pseudogenic_exon	1450	2637	.	+	1	ID=BF_RS21510;Name=BF_RS21510;Note=internal stop%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005803861.1;old_locus_tag=BF4505;product=glycosyltransferase family 4 protein;pseudo=_no_value;transl_table=11
NC_006347	GenBank	pseudogene	1450	2637	.	+	1	ID=BF_RS21510.pseudogene;Alias=BF_RS21510;Name=BF_RS21510;old_locus_tag=BF4505;pseudo=_no_value
NC_006347	GenBank	gene	2647	3657	.	+	1	ID=BF_RS21515;Name=BF_RS21515;old_locus_tag=BF4506
NC_006347	GenBank	mRNA	2647	3657	.	+	1	ID=BF_RS21515.t01;Parent=BF_RS21515
NC_006347	GenBank	CDS	2647	3657	.	+	1	ID=BF_RS21515.p01;Parent=BF_RS21515.t01;Name=BF_RS21515;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005797203.1;old_locus_tag=BF4506;product=glycosyltransferase;protein_id=WP_011203721.1;transl_table=11;translation=length.336
NC_006347	GenBank	exon	2647	3657	.	+	1	Parent=BF_RS21515.t01
NC_006347	GenBank	gene	3657	4856	.	+	1	ID=BF_RS21520;Name=BF_RS21520;old_locus_tag=BF4507
NC_006347	GenBank	mRNA	3657	4856	.	+	1	ID=BF_RS21520.t01;Parent=BF_RS21520
NC_006347	GenBank	CDS	3657	4856	.	+	1	ID=BF_RS21520.p01;Parent=BF_RS21520.t01;Name=BF_RS21520;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005811820.1;old_locus_tag=BF4507;product=glycosyltransferase family 4 protein;protein_id=WP_005814093.1;transl_table=11;translation=length.399
NC_006347	GenBank	exon	3657	4856	.	+	1	Parent=BF_RS21520.t01
NC_006347	GenBank	gene	4925	5572	.	+	1	ID=BF_RS21525;Name=BF_RS21525;old_locus_tag=BF4508
NC_006347	GenBank	mRNA	4925	5572	.	+	1	ID=BF_RS21525.t01;Parent=BF_RS21525
NC_006347	GenBank	CDS	4925	5572	.	+	1	ID=BF_RS21525.p01;Parent=BF_RS21525.t01;Name=BF_RS21525;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005797199.1;old_locus_tag=BF4508;product=hypothetical protein;protein_id=WP_005791920.1;transl_table=11;translation=length.215
NC_006347	GenBank	exon	4925	5572	.	+	1	Parent=BF_RS21525.t01
NC_006347	GenBank	gene	5624	6754	.	-	1	ID=BF_RS21530;Name=wecB;locus_tag=BF_RS21530;old_locus_tag=BF4509
NC_006347	GenBank	mRNA	5624	6754	.	-	1	ID=BF_RS21530.t01;Parent=BF_RS21530
NC_006347	GenBank	CDS	5624	6754	.	-	1	ID=BF_RS21530.p01;Parent=BF_RS21530.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005791919.1;locus_tag=BF_RS21530;old_locus_tag=BF4509;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_005791919.1;transl_table=11;translation=length.376
NC_006347	GenBank	exon	5624	6754	.	-	1	Parent=BF_RS21530.t01
NC_006347	GenBank	gene	6809	8011	.	-	1	ID=BF_RS21535;Name=wecC;locus_tag=BF_RS21535;old_locus_tag=BF4510
NC_006347	GenBank	mRNA	6809	8011	.	-	1	ID=BF_RS21535.t01;Parent=BF_RS21535
NC_006347	GenBank	CDS	6809	8011	.	-	1	ID=BF_RS21535.p01;Parent=BF_RS21535.t01;eC_number=1.1.1.336;Name=wecC;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005791918.1;locus_tag=BF_RS21535;old_locus_tag=BF4510;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_005791918.1;transl_table=11;translation=length.400
NC_006347	GenBank	exon	6809	8011	.	-	1	Parent=BF_RS21535.t01
NC_006347	GenBank	gene	8113	9378	.	+	1	ID=BF_RS21540;Name=BF_RS21540;old_locus_tag=BF4511
NC_006347	GenBank	mRNA	8113	9378	.	+	1	ID=BF_RS21540.t01;Parent=BF_RS21540
NC_006347	GenBank	CDS	8113	9378	.	+	1	ID=BF_RS21540.p01;Parent=BF_RS21540.t01;Name=BF_RS21540;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008662500.1;old_locus_tag=BF4511;product=glycosyltransferase;protein_id=WP_011203722.1;transl_table=11;translation=length.421
NC_006347	GenBank	exon	8113	9378	.	+	1	Parent=BF_RS21540.t01
NC_006347	GenBank	gene	9371	10144	.	+	1	ID=BF_RS21545;Name=BF_RS21545;old_locus_tag=BF4512
NC_006347	GenBank	mRNA	9371	10144	.	+	1	ID=BF_RS21545.t01;Parent=BF_RS21545
NC_006347	GenBank	CDS	9371	10144	.	+	1	ID=BF_RS21545.p01;Parent=BF_RS21545.t01;Name=BF_RS21545;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010993801.1;old_locus_tag=BF4512;product=glycosyltransferase;protein_id=WP_011203723.1;transl_table=11;translation=length.257
NC_006347	GenBank	exon	9371	10144	.	+	1	Parent=BF_RS21545.t01
NC_006347	GenBank	gene	10078	10144	.	-	1	ID=BF_RS21550;Name=BF_RS21550;old_locus_tag=BF4513
NC_006347	GenBank	mRNA	10078	10144	.	-	1	ID=BF_RS21550.t01;Parent=BF_RS21550
NC_006347	GenBank	CDS	10078	10144	.	-	1	ID=BF_RS21550.p01;Parent=BF_RS21550.t01;Name=BF_RS21550;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=3;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005814086.1;old_locus_tag=BF4513;product=NAD-dependent deacylase;protein_id=WP_005791915.1;transl_table=11;translation=length.236
NC_006347	GenBank	exon	10078	10144	.	-	1	Parent=BF_RS21550.t01