##gff-version 3
##sequence-region NC_006347 1 16750
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	16750	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	1221	.	-	1	ID=BF_RS09390;Name=BF_RS09390;old_locus_tag=BF1995
NC_006347	GenBank	mRNA	1	1221	.	-	1	ID=BF_RS09390.t01;Parent=BF_RS09390
NC_006347	GenBank	CDS	1	1221	.	-	1	ID=BF_RS09390.p01;Parent=BF_RS09390.t01;Name=BF_RS09390;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298813.1;old_locus_tag=BF1995;product=glycosyltransferase family 2 protein;protein_id=WP_032555549.1;transl_table=11;translation=length.406
NC_006347	GenBank	exon	1	1221	.	-	1	Parent=BF_RS09390.t01
NC_006347	GenBank	gene	1218	2675	.	-	1	ID=BF_RS09395;Name=BF_RS09395;old_locus_tag=BF1996
NC_006347	GenBank	mRNA	1218	2675	.	-	1	ID=BF_RS09395.t01;Parent=BF_RS09395
NC_006347	GenBank	CDS	1218	2675	.	-	1	ID=BF_RS09395.p01;Parent=BF_RS09395.t01;Name=BF_RS09395;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005794524.1;old_locus_tag=BF1996;product=hypothetical protein;protein_id=WP_011202687.1;transl_table=11;translation=length.485
NC_006347	GenBank	exon	1218	2675	.	-	1	Parent=BF_RS09395.t01
NC_006347	GenBank	gene	2737	3591	.	-	1	ID=BF_RS09400;Name=BF_RS09400;old_locus_tag=BF1997
NC_006347	GenBank	mRNA	2737	3591	.	-	1	ID=BF_RS09400.t01;Parent=BF_RS09400
NC_006347	GenBank	CDS	2737	3591	.	-	1	ID=BF_RS09400.p01;Parent=BF_RS09400.t01;Name=BF_RS09400;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005794522.1;old_locus_tag=BF1997;product=glycosyltransferase family 2 protein;protein_id=WP_011202688.1;transl_table=11;translation=length.284
NC_006347	GenBank	exon	2737	3591	.	-	1	Parent=BF_RS09400.t01
NC_006347	GenBank	gene	3575	4732	.	-	1	ID=BF_RS09405;Name=BF_RS09405;old_locus_tag=BF1998
NC_006347	GenBank	mRNA	3575	4732	.	-	1	ID=BF_RS09405.t01;Parent=BF_RS09405
NC_006347	GenBank	CDS	3575	4732	.	-	1	ID=BF_RS09405.p01;Parent=BF_RS09405.t01;Name=BF_RS09405;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005794520.1;old_locus_tag=BF1998;product=glycosyltransferase family 4 protein;protein_id=WP_011202689.1;transl_table=11;translation=length.385
NC_006347	GenBank	exon	3575	4732	.	-	1	Parent=BF_RS09405.t01
NC_006347	GenBank	gene	4738	5649	.	-	1	ID=BF_RS09410;Name=BF_RS09410;old_locus_tag=BF1999
NC_006347	GenBank	mRNA	4738	5649	.	-	1	ID=BF_RS09410.t01;Parent=BF_RS09410
NC_006347	GenBank	CDS	4738	5649	.	-	1	ID=BF_RS09410.p01;Parent=BF_RS09410.t01;Name=BF_RS09410;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005794519.1;old_locus_tag=BF1999;product=SP_1767 family glycosyltransferase;protein_id=WP_005794519.1;transl_table=11;translation=length.303
NC_006347	GenBank	exon	4738	5649	.	-	1	Parent=BF_RS09410.t01
NC_006347	GenBank	gene	5671	6789	.	-	1	ID=BF_RS09415;Name=BF_RS09415;old_locus_tag=BF2000
NC_006347	GenBank	mRNA	5671	6789	.	-	1	ID=BF_RS09415.t01;Parent=BF_RS09415
NC_006347	GenBank	CDS	5671	6789	.	-	1	ID=BF_RS09415.p01;Parent=BF_RS09415.t01;Name=BF_RS09415;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202690.1;old_locus_tag=BF2000;product=glycosyltransferase family 4 protein;protein_id=WP_011202690.1;transl_table=11;translation=length.372
NC_006347	GenBank	exon	5671	6789	.	-	1	Parent=BF_RS09415.t01
NC_006347	GenBank	gene	6818	8278	.	-	1	ID=BF_RS09420;Name=BF_RS09420;old_locus_tag=BF2001
NC_006347	GenBank	mRNA	6818	8278	.	-	1	ID=BF_RS09420.t01;Parent=BF_RS09420
NC_006347	GenBank	CDS	6818	8278	.	-	1	ID=BF_RS09420.p01;Parent=BF_RS09420.t01;Name=BF_RS09420;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005776896.1;old_locus_tag=BF2001;product=lipopolysaccharide biosynthesis protein;protein_id=WP_032570400.1;transl_table=11;translation=length.486
NC_006347	GenBank	exon	6818	8278	.	-	1	Parent=BF_RS09420.t01
NC_006347	GenBank	gene	8289	9467	.	-	1	ID=BF_RS09425;Name=BF_RS09425;old_locus_tag=BF2002
NC_006347	GenBank	mRNA	8289	9467	.	-	1	ID=BF_RS09425.t01;Parent=BF_RS09425
NC_006347	GenBank	CDS	8289	9467	.	-	1	ID=BF_RS09425.p01;Parent=BF_RS09425.t01;Name=BF_RS09425;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202692.1;old_locus_tag=BF2002;product=glycosyltransferase family 4 protein;protein_id=WP_011202692.1;transl_table=11;translation=length.392
NC_006347	GenBank	exon	8289	9467	.	-	1	Parent=BF_RS09425.t01
NC_006347	GenBank	gene	10060	11280	.	-	1	ID=BF_RS09430;Name=BF_RS09430;old_locus_tag=BF2003
NC_006347	GenBank	mRNA	10060	11280	.	-	1	ID=BF_RS09430.t01;Parent=BF_RS09430
NC_006347	GenBank	CDS	10060	11280	.	-	1	ID=BF_RS09430.p01;Parent=BF_RS09430.t01;Name=BF_RS09430;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008659913.1;old_locus_tag=BF2003;product=glycosyltransferase;protein_id=WP_005794515.1;transl_table=11;translation=length.406
NC_006347	GenBank	exon	10060	11280	.	-	1	Parent=BF_RS09430.t01
NC_006347	GenBank	gene	11505	12395	.	-	1	ID=BF_RS09435;Name=BF_RS09435;old_locus_tag=BF2005
NC_006347	GenBank	mRNA	11505	12395	.	-	1	ID=BF_RS09435.t01;Parent=BF_RS09435
NC_006347	GenBank	CDS	11505	12395	.	-	1	ID=BF_RS09435.p01;Parent=BF_RS09435.t01;Name=BF_RS09435;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202693.1;old_locus_tag=BF2005;product=glycosyltransferase family 2 protein;protein_id=WP_011202693.1;transl_table=11;translation=length.296
NC_006347	GenBank	exon	11505	12395	.	-	1	Parent=BF_RS09435.t01
NC_006347	GenBank	gene	12434	13780	.	-	1	ID=BF_RS09440;Name=BF_RS09440;old_locus_tag=BF2006
NC_006347	GenBank	mRNA	12434	13780	.	-	1	ID=BF_RS09440.t01;Parent=BF_RS09440
NC_006347	GenBank	CDS	12434	13780	.	-	1	ID=BF_RS09440.p01;Parent=BF_RS09440.t01;Name=BF_RS09440;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005787189.1;old_locus_tag=BF2006;product=O-antigen ligase family protein;protein_id=WP_165443302.1;transl_table=11;translation=length.448
NC_006347	GenBank	exon	12434	13780	.	-	1	Parent=BF_RS09440.t01
NC_006347	GenBank	gene	13773	15986	.	-	1	ID=BF_RS09445;Name=BF_RS09445;old_locus_tag=BF2007
NC_006347	GenBank	mRNA	13773	15986	.	-	1	ID=BF_RS09445.t01;Parent=BF_RS09445
NC_006347	GenBank	CDS	13773	15986	.	-	1	ID=BF_RS09445.p01;Parent=BF_RS09445.t01;Name=BF_RS09445;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005794512.1;old_locus_tag=BF2007;product=hypothetical protein;protein_id=WP_005794512.1;transl_table=11;translation=length.737
NC_006347	GenBank	exon	13773	15986	.	-	1	Parent=BF_RS09445.t01
NC_006347	GenBank	gene	16001	16750	.	-	1	ID=BF_RS09450;Name=BF_RS09450;old_locus_tag=BF2008
NC_006347	GenBank	mRNA	16001	16750	.	-	1	ID=BF_RS09450.t01;Parent=BF_RS09450
NC_006347	GenBank	CDS	16001	16750	.	-	1	ID=BF_RS09450.p01;Parent=BF_RS09450.t01;Name=BF_RS09450;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800147.1;old_locus_tag=BF2008;product=TolC family protein;protein_id=WP_011202695.1;transl_table=11;translation=length.249
NC_006347	GenBank	exon	16001	16750	.	-	1	Parent=BF_RS09450.t01