##gff-version 3
##sequence-region NC_016776 1 16044
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis 638R
# Note Bacteroides fragilis 638R, complete sequence.
# date 17-FEB-2020
NC_016776	GenBank	region	1	16044	.	+	1	ID=NC_016776;Dbxref=BioProject:PRJNA224116,taxon:862962;Name=NC_016776;Note=Bacteroides fragilis 638R%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,439 CDSs (total) :: 4,346 Genes (coding) :: 4,241 CDSs (with protein) :: 4,241 Genes (RNA) :: 93 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C439 CDSs (total) :: 4%2C346 Genes (coding) :: 4%2C241 CDSs (with protein) :: 4%2C241 Genes (RNA) :: 93 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-FEB-2020;mol_type=genomic DNA;organism=Bacteroides fragilis 638R;strain=638R
NC_016776	GenBank	gene	1	1221	.	-	1	ID=BF638R_RS09990;Name=BF638R_RS09990;old_locus_tag=BF638R_2121
NC_016776	GenBank	mRNA	1	1221	.	-	1	ID=BF638R_RS09990.t01;Parent=BF638R_RS09990
NC_016776	GenBank	CDS	1	1221	.	-	1	ID=BF638R_RS09990.p01;Parent=BF638R_RS09990.t01;Name=BF638R_RS09990;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298813.1;old_locus_tag=BF638R_2121;product=glycosyltransferase family 2 protein;protein_id=WP_014298813.1;transl_table=11;translation=length.406
NC_016776	GenBank	exon	1	1221	.	-	1	Parent=BF638R_RS09990.t01
NC_016776	GenBank	gene	1218	2063	.	-	1	ID=BF638R_RS09995;Name=BF638R_RS09995;old_locus_tag=BF638R_2122
NC_016776	GenBank	mRNA	1218	2063	.	-	1	ID=BF638R_RS09995.t01;Parent=BF638R_RS09995
NC_016776	GenBank	CDS	1218	2063	.	-	1	ID=BF638R_RS09995.p01;Parent=BF638R_RS09995.t01;Name=BF638R_RS09995;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800167.1;old_locus_tag=BF638R_2122;product=glycosyltransferase family 2 protein;protein_id=WP_014298814.1;transl_table=11;translation=length.281
NC_016776	GenBank	exon	1218	2063	.	-	1	Parent=BF638R_RS09995.t01
NC_016776	GenBank	gene	2086	2997	.	-	1	ID=BF638R_RS10000;Name=BF638R_RS10000;old_locus_tag=BF638R_2123
NC_016776	GenBank	mRNA	2086	2997	.	-	1	ID=BF638R_RS10000.t01;Parent=BF638R_RS10000
NC_016776	GenBank	CDS	2086	2997	.	-	1	ID=BF638R_RS10000.p01;Parent=BF638R_RS10000.t01;Name=BF638R_RS10000;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800166.1;old_locus_tag=BF638R_2123;product=SP_1767 family glycosyltransferase;protein_id=WP_014298815.1;transl_table=11;translation=length.303
NC_016776	GenBank	exon	2086	2997	.	-	1	Parent=BF638R_RS10000.t01
NC_016776	GenBank	gene	2994	4178	.	-	1	ID=BF638R_RS24380;Name=BF638R_RS24380;old_locus_tag=BF638R_2124
NC_016776	GenBank	mRNA	2994	4178	.	-	1	ID=BF638R_RS24380.t01;Parent=BF638R_RS24380
NC_016776	GenBank	CDS	2994	4178	.	-	1	ID=BF638R_RS24380.p01;Parent=BF638R_RS24380.t01;Name=BF638R_RS24380;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004311599.1;old_locus_tag=BF638R_2124;product=glycosyltransferase family 4 protein;protein_id=WP_014298816.1;transl_table=11;translation=length.394
NC_016776	GenBank	exon	2994	4178	.	-	1	Parent=BF638R_RS24380.t01
NC_016776	GenBank	gene	5258	6712	.	-	1	ID=BF638R_RS10010;Name=BF638R_RS10010;old_locus_tag=BF638R_2125
NC_016776	GenBank	mRNA	5258	6712	.	-	1	ID=BF638R_RS10010.t01;Parent=BF638R_RS10010
NC_016776	GenBank	CDS	5258	6712	.	-	1	ID=BF638R_RS10010.p01;Parent=BF638R_RS10010.t01;Name=BF638R_RS10010;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800162.1;old_locus_tag=BF638R_2125;product=lipopolysaccharide biosynthesis protein;protein_id=WP_014298817.1;transl_table=11;translation=length.484
NC_016776	GenBank	exon	5258	6712	.	-	1	Parent=BF638R_RS10010.t01
NC_016776	GenBank	gene	6924	7874	.	-	1	ID=BF638R_RS10015;Name=BF638R_RS10015;old_locus_tag=BF638R_2126
NC_016776	GenBank	mRNA	6924	7874	.	-	1	ID=BF638R_RS10015.t01;Parent=BF638R_RS10015
NC_016776	GenBank	CDS	6924	7874	.	-	1	ID=BF638R_RS10015.p01;Parent=BF638R_RS10015.t01;Name=BF638R_RS10015;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800161.1;old_locus_tag=BF638R_2126;product=glycosyltransferase;protein_id=WP_014298818.1;transl_table=11;translation=length.316
NC_016776	GenBank	exon	6924	7874	.	-	1	Parent=BF638R_RS10015.t01
NC_016776	GenBank	gene	8123	8455	.	-	1	ID=BF638R_RS10020;Name=BF638R_RS10020;old_locus_tag=BF638R_2127
NC_016776	GenBank	mRNA	8123	8455	.	-	1	ID=BF638R_RS10020.t01;Parent=BF638R_RS10020
NC_016776	GenBank	CDS	8123	8455	.	-	1	ID=BF638R_RS10020.p01;Parent=BF638R_RS10020.t01;Name=BF638R_RS10020;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800156.1;old_locus_tag=BF638R_2127;product=hypothetical protein;protein_id=WP_014298819.1;transl_table=11;translation=length.110
NC_016776	GenBank	exon	8123	8455	.	-	1	Parent=BF638R_RS10020.t01
NC_016776	GenBank	gene	8515	8802	.	+	1	ID=BF638R_RS10025;Name=BF638R_RS10025
NC_016776	GenBank	mRNA	8515	8802	.	+	1	ID=BF638R_RS10025.t01;Parent=BF638R_RS10025
NC_016776	GenBank	CDS	8515	8802	.	+	1	ID=BF638R_RS10025.p01;Parent=BF638R_RS10025.t01;Name=BF638R_RS10025;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=WP_136199578.1;transl_table=11;translation=length.95
NC_016776	GenBank	exon	8515	8802	.	+	1	Parent=BF638R_RS10025.t01
NC_016776	GenBank	gene	8928	9119	.	+	1	ID=BF638R_RS24385;Name=BF638R_RS24385
NC_016776	GenBank	mRNA	8928	9119	.	+	1	ID=BF638R_RS24385.t01;Parent=BF638R_RS24385
NC_016776	GenBank	CDS	8928	9119	.	+	1	ID=BF638R_RS24385.p01;Parent=BF638R_RS24385.t01;Name=BF638R_RS24385;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=WP_133123997.1;transl_table=11;translation=length.63
NC_016776	GenBank	exon	8928	9119	.	+	1	Parent=BF638R_RS24385.t01
NC_016776	GenBank	gene	9365	10585	.	-	1	ID=BF638R_RS10030;Name=BF638R_RS10030;old_locus_tag=BF638R_2129
NC_016776	GenBank	mRNA	9365	10585	.	-	1	ID=BF638R_RS10030.t01;Parent=BF638R_RS10030
NC_016776	GenBank	CDS	9365	10585	.	-	1	ID=BF638R_RS10030.p01;Parent=BF638R_RS10030.t01;Name=BF638R_RS10030;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008659913.1;old_locus_tag=BF638R_2129;product=glycosyltransferase;protein_id=WP_014298821.1;transl_table=11;translation=length.406
NC_016776	GenBank	exon	9365	10585	.	-	1	Parent=BF638R_RS10030.t01
NC_016776	GenBank	gene	10800	11690	.	-	1	ID=BF638R_RS10035;Name=BF638R_RS10035;old_locus_tag=BF638R_2130
NC_016776	GenBank	mRNA	10800	11690	.	-	1	ID=BF638R_RS10035.t01;Parent=BF638R_RS10035
NC_016776	GenBank	CDS	10800	11690	.	-	1	ID=BF638R_RS10035.p01;Parent=BF638R_RS10035.t01;Name=BF638R_RS10035;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202693.1;old_locus_tag=BF638R_2130;product=glycosyltransferase family 2 protein;protein_id=WP_014298822.1;transl_table=11;translation=length.296
NC_016776	GenBank	exon	10800	11690	.	-	1	Parent=BF638R_RS10035.t01
NC_016776	GenBank	gene	11736	13073	.	-	1	ID=BF638R_RS10040;Name=BF638R_RS10040;old_locus_tag=BF638R_2131
NC_016776	GenBank	mRNA	11736	13073	.	-	1	ID=BF638R_RS10040.t01;Parent=BF638R_RS10040
NC_016776	GenBank	CDS	11736	13073	.	-	1	ID=BF638R_RS10040.p01;Parent=BF638R_RS10040.t01;Name=BF638R_RS10040;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008659916.1;old_locus_tag=BF638R_2131;product=O-antigen ligase family protein;protein_id=WP_014298823.1;transl_table=11;translation=length.445
NC_016776	GenBank	exon	11736	13073	.	-	1	Parent=BF638R_RS10040.t01
NC_016776	GenBank	gene	13066	15282	.	-	1	ID=BF638R_RS10045;Name=BF638R_RS10045;old_locus_tag=BF638R_2132
NC_016776	GenBank	mRNA	13066	15282	.	-	1	ID=BF638R_RS10045.t01;Parent=BF638R_RS10045
NC_016776	GenBank	CDS	13066	15282	.	-	1	ID=BF638R_RS10045.p01;Parent=BF638R_RS10045.t01;Name=BF638R_RS10045;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800150.1;old_locus_tag=BF638R_2132;product=membrane protein;protein_id=WP_014298824.1;transl_table=11;translation=length.738
NC_016776	GenBank	exon	13066	15282	.	-	1	Parent=BF638R_RS10045.t01
NC_016776	GenBank	gene	15295	16044	.	-	1	ID=BF638R_RS10050;Name=BF638R_RS10050;old_locus_tag=BF638R_2133
NC_016776	GenBank	mRNA	15295	16044	.	-	1	ID=BF638R_RS10050.t01;Parent=BF638R_RS10050
NC_016776	GenBank	CDS	15295	16044	.	-	1	ID=BF638R_RS10050.p01;Parent=BF638R_RS10050.t01;Name=BF638R_RS10050;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800147.1;old_locus_tag=BF638R_2133;product=TolC family protein;protein_id=WP_008659918.1;transl_table=11;translation=length.249
NC_016776	GenBank	exon	15295	16044	.	-	1	Parent=BF638R_RS10050.t01