##gff-version 3
##sequence-region NC_009441 1 21638
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	21638	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	3951	.	-	1	ID=FJOH_RS10520;Dbxref=GeneID:31764921;Name=FJOH_RS10520;old_locus_tag=Fjoh_2019
NC_009441	GenBank	mRNA	1	3951	.	-	1	ID=FJOH_RS10520.t01;Parent=FJOH_RS10520
NC_009441	GenBank	CDS	1	3951	.	-	1	ID=FJOH_RS10520.p01;Parent=FJOH_RS10520.t01;Dbxref=GeneID:31764921;Name=FJOH_RS10520;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008463337.1;old_locus_tag=Fjoh_2019;product=response regulator;protein_id=WP_012024090.1;transl_table=11;translation=length.1316
NC_009441	GenBank	exon	1	3951	.	-	1	Parent=FJOH_RS10520.t01
NC_009441	GenBank	gene	4342	7359	.	+	1	ID=FJOH_RS10525;Dbxref=GeneID:31764922;Name=FJOH_RS10525;old_locus_tag=Fjoh_2020
NC_009441	GenBank	mRNA	4342	7359	.	+	1	ID=FJOH_RS10525.t01;Parent=FJOH_RS10525
NC_009441	GenBank	CDS	4342	7359	.	+	1	ID=FJOH_RS10525.p01;Parent=FJOH_RS10525.t01;Dbxref=GeneID:31764922;Name=FJOH_RS10525;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018627462.1;old_locus_tag=Fjoh_2020;product=TonB-dependent receptor;protein_id=WP_012024091.1;transl_table=11;translation=length.1005
NC_009441	GenBank	exon	4342	7359	.	+	1	Parent=FJOH_RS10525.t01
NC_009441	GenBank	gene	7376	8899	.	+	1	ID=FJOH_RS10530;Dbxref=GeneID:31764923;Name=FJOH_RS10530;old_locus_tag=Fjoh_2021
NC_009441	GenBank	mRNA	7376	8899	.	+	1	ID=FJOH_RS10530.t01;Parent=FJOH_RS10530
NC_009441	GenBank	CDS	7376	8899	.	+	1	ID=FJOH_RS10530.p01;Parent=FJOH_RS10530.t01;Dbxref=GeneID:31764923;Name=FJOH_RS10530;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008463339.1;old_locus_tag=Fjoh_2021;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_012024092.1;transl_table=11;translation=length.507
NC_009441	GenBank	exon	7376	8899	.	+	1	Parent=FJOH_RS10530.t01
NC_009441	GenBank	gene	9179	10351	.	+	1	ID=FJOH_RS10535;Dbxref=GeneID:31764924;Name=FJOH_RS10535;old_locus_tag=Fjoh_2022
NC_009441	GenBank	mRNA	9179	10351	.	+	1	ID=FJOH_RS10535.t01;Parent=FJOH_RS10535
NC_009441	GenBank	CDS	9179	10351	.	+	1	ID=FJOH_RS10535.p01;Parent=FJOH_RS10535.t01;Dbxref=GeneID:31764924;Name=FJOH_RS10535;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008463340.1;old_locus_tag=Fjoh_2022;product=cellulase family glycosylhydrolase;protein_id=WP_012024093.1;transl_table=11;translation=length.390
NC_009441	GenBank	exon	9179	10351	.	+	1	Parent=FJOH_RS10535.t01
NC_009441	GenBank	gene	10630	11658	.	+	1	ID=FJOH_RS10540;Dbxref=GeneID:31764925;Name=FJOH_RS10540;old_locus_tag=Fjoh_2023
NC_009441	GenBank	mRNA	10630	11658	.	+	1	ID=FJOH_RS10540.t01;Parent=FJOH_RS10540
NC_009441	GenBank	CDS	10630	11658	.	+	1	ID=FJOH_RS10540.p01;Parent=FJOH_RS10540.t01;Dbxref=GeneID:31764925;Name=FJOH_RS10540;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008463341.1;old_locus_tag=Fjoh_2023;product=glycoside hydrolase family 43 protein;protein_id=WP_012024094.1;transl_table=11;translation=length.342
NC_009441	GenBank	exon	10630	11658	.	+	1	Parent=FJOH_RS10540.t01
NC_009441	GenBank	gene	11857	13668	.	+	1	ID=FJOH_RS10545;Dbxref=GeneID:31764926;Name=FJOH_RS10545;old_locus_tag=Fjoh_2024
NC_009441	GenBank	mRNA	11857	13668	.	+	1	ID=FJOH_RS10545.t01;Parent=FJOH_RS10545
NC_009441	GenBank	CDS	11857	13668	.	+	1	ID=FJOH_RS10545.p01;Parent=FJOH_RS10545.t01;Dbxref=GeneID:31764926;Name=FJOH_RS10545;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006844643.1;old_locus_tag=Fjoh_2024;product=beta-galactosidase;protein_id=WP_012024095.1;transl_table=11;translation=length.603
NC_009441	GenBank	exon	11857	13668	.	+	1	Parent=FJOH_RS10545.t01
NC_009441	GenBank	gene	13901	14923	.	+	1	ID=FJOH_RS10550;Dbxref=GeneID:31764927;Name=FJOH_RS10550;old_locus_tag=Fjoh_2025
NC_009441	GenBank	mRNA	13901	14923	.	+	1	ID=FJOH_RS10550.t01;Parent=FJOH_RS10550
NC_009441	GenBank	CDS	13901	14923	.	+	1	ID=FJOH_RS10550.p01;Parent=FJOH_RS10550.t01;Dbxref=GeneID:31764927;Name=FJOH_RS10550;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012024096.1;old_locus_tag=Fjoh_2025;product=family 43 glycosylhydrolase;protein_id=WP_012024096.1;transl_table=11;translation=length.340
NC_009441	GenBank	exon	13901	14923	.	+	1	Parent=FJOH_RS10550.t01
NC_009441	GenBank	gene	14948	16126	.	+	1	ID=FJOH_RS10555;Dbxref=GeneID:31764928;Name=FJOH_RS10555;old_locus_tag=Fjoh_2026
NC_009441	GenBank	mRNA	14948	16126	.	+	1	ID=FJOH_RS10555.t01;Parent=FJOH_RS10555
NC_009441	GenBank	CDS	14948	16126	.	+	1	ID=FJOH_RS10555.p01;Parent=FJOH_RS10555.t01;Dbxref=GeneID:31764928;Name=FJOH_RS10555;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008463346.1;old_locus_tag=Fjoh_2026;product=galactose mutarotase;protein_id=WP_012024097.1;transl_table=11;translation=length.392
NC_009441	GenBank	exon	14948	16126	.	+	1	Parent=FJOH_RS10555.t01
NC_009441	GenBank	gene	16323	17300	.	+	1	ID=FJOH_RS10560;Dbxref=GeneID:31764929;Name=FJOH_RS10560;old_locus_tag=Fjoh_2027
NC_009441	GenBank	mRNA	16323	17300	.	+	1	ID=FJOH_RS10560.t01;Parent=FJOH_RS10560
NC_009441	GenBank	CDS	16323	17300	.	+	1	ID=FJOH_RS10560.p01;Parent=FJOH_RS10560.t01;Dbxref=GeneID:31764929;Name=FJOH_RS10560;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008463348.1;old_locus_tag=Fjoh_2027;product=family 43 glycosylhydrolase;protein_id=WP_012024098.1;transl_table=11;translation=length.325
NC_009441	GenBank	exon	16323	17300	.	+	1	Parent=FJOH_RS10560.t01
NC_009441	GenBank	gene	17485	19584	.	+	1	ID=FJOH_RS10565;Dbxref=GeneID:31764930;Name=FJOH_RS10565;old_locus_tag=Fjoh_2028
NC_009441	GenBank	mRNA	17485	19584	.	+	1	ID=FJOH_RS10565.t01;Parent=FJOH_RS10565
NC_009441	GenBank	CDS	17485	19584	.	+	1	ID=FJOH_RS10565.p01;Parent=FJOH_RS10565.t01;Dbxref=GeneID:31764930;Name=FJOH_RS10565;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007810292.1;old_locus_tag=Fjoh_2028;product=alpha-L-fucosidase;protein_id=WP_044047662.1;transl_table=11;translation=length.699
NC_009441	GenBank	exon	17485	19584	.	+	1	Parent=FJOH_RS10565.t01
NC_009441	GenBank	gene	19725	21638	.	+	1	ID=FJOH_RS10570;Dbxref=GeneID:31764931;Name=nagB;locus_tag=FJOH_RS10570;old_locus_tag=Fjoh_2029
NC_009441	GenBank	mRNA	19725	21638	.	+	1	ID=FJOH_RS10570.t01;Parent=FJOH_RS10570
NC_009441	GenBank	CDS	19725	21638	.	+	1	ID=FJOH_RS10570.p01;Parent=FJOH_RS10570.t01;Dbxref=GeneID:31764931;eC_number=3.5.99.6;Name=nagB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007810293.1;locus_tag=FJOH_RS10570;old_locus_tag=Fjoh_2029;product=glucosamine-6-phosphate deaminase;protein_id=WP_012024100.1;transl_table=11;translation=length.637
NC_009441	GenBank	exon	19725	21638	.	+	1	Parent=FJOH_RS10570.t01