##gff-version 3
##sequence-region NC_009441 1 18097
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	18097	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	2880	.	-	1	ID=FJOH_RS08085;Dbxref=GeneID:31764437;Name=FJOH_RS08085;old_locus_tag=Fjoh_1559
NC_009441	GenBank	mRNA	1	2880	.	-	1	ID=FJOH_RS08085.t01;Parent=FJOH_RS08085
NC_009441	GenBank	CDS	1	2880	.	-	1	ID=FJOH_RS08085.p01;Parent=FJOH_RS08085.t01;Dbxref=GeneID:31764437;Name=FJOH_RS08085;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020211727.1;old_locus_tag=Fjoh_1559;product=hypothetical protein;protein_id=WP_012023635.1;transl_table=11;translation=length.959
NC_009441	GenBank	exon	1	2880	.	-	1	Parent=FJOH_RS08085.t01
NC_009441	GenBank	gene	3225	6374	.	+	1	ID=FJOH_RS08090;Dbxref=GeneID:31764438;Name=FJOH_RS08090;old_locus_tag=Fjoh_1560
NC_009441	GenBank	mRNA	3225	6374	.	+	1	ID=FJOH_RS08090.t01;Parent=FJOH_RS08090
NC_009441	GenBank	CDS	3225	6374	.	+	1	ID=FJOH_RS08090.p01;Parent=FJOH_RS08090.t01;Dbxref=GeneID:31764438;Name=FJOH_RS08090;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017498001.1;old_locus_tag=Fjoh_1560;product=TonB-dependent receptor;protein_id=WP_012023636.1;transl_table=11;translation=length.1049
NC_009441	GenBank	exon	3225	6374	.	+	1	Parent=FJOH_RS08090.t01
NC_009441	GenBank	gene	6393	7928	.	+	1	ID=FJOH_RS08095;Dbxref=GeneID:31764439;Name=FJOH_RS08095;old_locus_tag=Fjoh_1561
NC_009441	GenBank	mRNA	6393	7928	.	+	1	ID=FJOH_RS08095.t01;Parent=FJOH_RS08095
NC_009441	GenBank	CDS	6393	7928	.	+	1	ID=FJOH_RS08095.p01;Parent=FJOH_RS08095.t01;Dbxref=GeneID:31764439;Name=FJOH_RS08095;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008466693.1;old_locus_tag=Fjoh_1561;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_012023637.1;transl_table=11;translation=length.511
NC_009441	GenBank	exon	6393	7928	.	+	1	Parent=FJOH_RS08095.t01
NC_009441	GenBank	gene	8150	9613	.	+	1	ID=FJOH_RS08100;Dbxref=GeneID:31764440;Name=FJOH_RS08100;old_locus_tag=Fjoh_1562
NC_009441	GenBank	mRNA	8150	9613	.	+	1	ID=FJOH_RS08100.t01;Parent=FJOH_RS08100
NC_009441	GenBank	CDS	8150	9613	.	+	1	ID=FJOH_RS08100.p01;Parent=FJOH_RS08100.t01;Dbxref=GeneID:31764440;Name=FJOH_RS08100;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017497999.1;old_locus_tag=Fjoh_1562;product=glycoside hydrolase family 30 protein;protein_id=WP_012023638.1;transl_table=11;translation=length.487
NC_009441	GenBank	exon	8150	9613	.	+	1	Parent=FJOH_RS08100.t01
NC_009441	GenBank	gene	9648	11111	.	+	1	ID=FJOH_RS08105;Dbxref=GeneID:31764441;Name=FJOH_RS08105;old_locus_tag=Fjoh_1563
NC_009441	GenBank	mRNA	9648	11111	.	+	1	ID=FJOH_RS08105.t01;Parent=FJOH_RS08105
NC_009441	GenBank	CDS	9648	11111	.	+	1	ID=FJOH_RS08105.p01;Parent=FJOH_RS08105.t01;Dbxref=GeneID:31764441;Name=FJOH_RS08105;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008466700.1;old_locus_tag=Fjoh_1563;product=glycoside hydrolase family 30 protein;protein_id=WP_012023639.1;transl_table=11;translation=length.487
NC_009441	GenBank	exon	9648	11111	.	+	1	Parent=FJOH_RS08105.t01
NC_009441	GenBank	gene	11145	13412	.	+	1	ID=FJOH_RS08110;Dbxref=GeneID:31764442;Name=FJOH_RS08110;old_locus_tag=Fjoh_1564
NC_009441	GenBank	mRNA	11145	13412	.	+	1	ID=FJOH_RS08110.t01;Parent=FJOH_RS08110
NC_009441	GenBank	CDS	11145	13412	.	+	1	ID=FJOH_RS08110.p01;Parent=FJOH_RS08110.t01;Dbxref=GeneID:31764442;Name=FJOH_RS08110;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007804883.1;old_locus_tag=Fjoh_1564;product=glycosyl hydrolase;protein_id=WP_012023640.1;transl_table=11;translation=length.755
NC_009441	GenBank	exon	11145	13412	.	+	1	Parent=FJOH_RS08110.t01
NC_009441	GenBank	gene	13589	14428	.	+	1	ID=FJOH_RS08115;Dbxref=GeneID:31764443;Name=FJOH_RS08115;old_locus_tag=Fjoh_1565
NC_009441	GenBank	mRNA	13589	14428	.	+	1	ID=FJOH_RS08115.t01;Parent=FJOH_RS08115
NC_009441	GenBank	CDS	13589	14428	.	+	1	ID=FJOH_RS08115.p01;Parent=FJOH_RS08115.t01;Dbxref=GeneID:31764443;Name=FJOH_RS08115;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012023641.1;old_locus_tag=Fjoh_1565;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_012023641.1;transl_table=11;translation=length.279
NC_009441	GenBank	exon	13589	14428	.	+	1	Parent=FJOH_RS08115.t01
NC_009441	GenBank	gene	14430	15854	.	+	1	ID=FJOH_RS08120;Dbxref=GeneID:31764444;Name=FJOH_RS08120;old_locus_tag=Fjoh_1566
NC_009441	GenBank	mRNA	14430	15854	.	+	1	ID=FJOH_RS08120.t01;Parent=FJOH_RS08120
NC_009441	GenBank	CDS	14430	15854	.	+	1	ID=FJOH_RS08120.p01;Parent=FJOH_RS08120.t01;Dbxref=GeneID:31764444;eC_number=3.2.1.75;Name=FJOH_RS08120;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008466710.1;old_locus_tag=Fjoh_1566;product=glucosylceramidase;protein_id=WP_012023642.1;transl_table=11;translation=length.474
NC_009441	GenBank	exon	14430	15854	.	+	1	Parent=FJOH_RS08120.t01
NC_009441	GenBank	gene	15866	18097	.	+	1	ID=FJOH_RS08125;Dbxref=GeneID:31764445;Name=FJOH_RS08125;old_locus_tag=Fjoh_1567
NC_009441	GenBank	mRNA	15866	18097	.	+	1	ID=FJOH_RS08125.t01;Parent=FJOH_RS08125
NC_009441	GenBank	CDS	15866	18097	.	+	1	ID=FJOH_RS08125.p01;Parent=FJOH_RS08125.t01;Dbxref=GeneID:31764445;Name=FJOH_RS08125;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007804879.1;old_locus_tag=Fjoh_1567;product=beta-glucosidase;protein_id=WP_012023643.1;transl_table=11;translation=length.743
NC_009441	GenBank	exon	15866	18097	.	+	1	Parent=FJOH_RS08125.t01