##gff-version 3
##sequence-region MWTO01000004 1 12482
# conversion-by bp_genbank2gff3.pl
# organism Yersinia intermedia
# Note Yersinia intermedia strain SCPM-O-B-7605 NODE_4_length_210589_cov_2.05095, whole genome shotgun sequence.
# date 14-JUN-2017
MWTO01000004	GenBank	region	1	12482	.	+	1	ID=MWTO01000004;Dbxref=BioProject:PRJNA269675,taxon:631;Name=MWTO01000004;Note=Yersinia intermedia strain SCPM-O-B-7605 NODE_4_length_210589_cov_2.05095%2C whole genome shotgun sequence.,Bacteria and source DNA available from SRC AMB. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.0x Sequencing Technology :: IonTorrent ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/06/2017 12:03:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set,GeneMarkS+ Annotation Software revision :: 4.1 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,725 CDS (total) :: 4,643 Genes (coding) :: 3,840 CDS (coding) :: 3,840 Genes (RNA) :: 82 rRNAs :: 5,3,3 (5S,16S,23S) complete rRNAs :: 5,1 (5S,16S) partial rRNAs :: 2,3 (16S,23S) tRNAs :: 61 ncRNAs :: 10 Pseudo Genes (total) :: 803 Pseudo Genes (ambiguous residues) :: 0 of 803 Pseudo Genes (frameshifted) :: 694 of 803 Pseudo Genes (incomplete) :: 108 of 803 Pseudo Genes (internal stop) :: 60 of 803 Pseudo Genes (multiple problems) :: 53 of 803 ##Genome-Annotation-Data-END## ;comment1=Bacteria and source DNA available from SRC AMB. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.0x Sequencing Technology :: IonTorrent ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/06/2017 12:03:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set%3B GeneMarkS+ Annotation Software revision :: 4.1 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C725 CDS (total) :: 4%2C643 Genes (coding) :: 3%2C840 CDS (coding) :: 3%2C840 Genes (RNA) :: 82 rRNAs :: 5%2C 3%2C 3 (5S%2C 16S%2C 23S) complete rRNAs :: 5%2C 1 (5S%2C 16S) partial rRNAs :: 2%2C 3 (16S%2C 23S) tRNAs :: 61 ncRNAs :: 10 Pseudo Genes (total) :: 803 Pseudo Genes (ambiguous residues) :: 0 of 803 Pseudo Genes (frameshifted) :: 694 of 803 Pseudo Genes (incomplete) :: 108 of 803 Pseudo Genes (internal stop) :: 60 of 803 Pseudo Genes (multiple problems) :: 53 of 803 ##Genome-Annotation-Data-END## ;date=14-JUN-2017;mol_type=genomic DNA;organism=Yersinia intermedia;strain=SCPM-O-B-7605;submitter_seqid=NODE_4_length_210589_cov_2.05095
MWTO01000004	GenBank	gene	1	1101	.	-	1	ID=B4916_03530;Name=B4916_03530
MWTO01000004	GenBank	mRNA	1	1101	.	-	1	ID=B4916_03530.t01;Parent=B4916_03530
MWTO01000004	GenBank	CDS	1	1101	.	-	1	ID=B4916_03530.p01;Parent=B4916_03530.t01;Name=B4916_03530;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005182354.1;product=LPS O-antigen length regulator;protein_id=OWF92357.1;transl_table=11;translation=length.366
MWTO01000004	GenBank	exon	1	1101	.	-	1	Parent=B4916_03530.t01
MWTO01000004	GenBank	pseudogenic_exon	1333	1910	.	-	1	ID=B4916_03535;Name=B4916_03535;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing start and stop%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014609409.1;product=IS256 family transposase;pseudo=_no_value;transl_table=11
MWTO01000004	GenBank	pseudogene	1333	1910	.	-	1	ID=B4916_03535.pseudogene;Alias=B4916_03535;Name=B4916_03535;pseudo=_no_value
MWTO01000004	GenBank	pseudogenic_exon	1847	2349	.	-	1	ID=B4916_03540;Name=B4916_03540;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing start and stop%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611473.1;product=hypothetical protein;pseudo=_no_value;transl_table=11
MWTO01000004	GenBank	pseudogene	1847	2349	.	-	1	ID=B4916_03540.pseudogene;Alias=B4916_03540;Name=B4916_03540;pseudo=_no_value
MWTO01000004	GenBank	gene	2467	3483	.	-	1	ID=B4916_03545;Name=B4916_03545
MWTO01000004	GenBank	mRNA	2467	3483	.	-	1	ID=B4916_03545.t01;Parent=B4916_03545
MWTO01000004	GenBank	CDS	2467	3483	.	-	1	ID=B4916_03545.p01;Parent=B4916_03545.t01;Name=B4916_03545;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005182349.1;product=UDP-glucose 4-epimerase GalE;protein_id=OWF92358.1;transl_table=11;translation=length.338
MWTO01000004	GenBank	exon	2467	3483	.	-	1	Parent=B4916_03545.t01
MWTO01000004	GenBank	gene	3932	5065	.	-	1	ID=B4916_03550;Name=B4916_03550
MWTO01000004	GenBank	mRNA	3932	5065	.	-	1	ID=B4916_03550.t01;Parent=B4916_03550
MWTO01000004	GenBank	CDS	3932	5065	.	-	1	ID=B4916_03550.p01;Parent=B4916_03550.t01;Name=B4916_03550;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005182344.1;product=glycosyltransferase family 1 protein;protein_id=OWF92359.1;transl_table=11;translation=length.377
MWTO01000004	GenBank	exon	3932	5065	.	-	1	Parent=B4916_03550.t01
MWTO01000004	GenBank	gene	5069	6154	.	-	1	ID=B4916_03555;Name=B4916_03555
MWTO01000004	GenBank	mRNA	5069	6154	.	-	1	ID=B4916_03555.t01;Parent=B4916_03555
MWTO01000004	GenBank	CDS	5069	6154	.	-	1	ID=B4916_03555.p01;Parent=B4916_03555.t01;Name=B4916_03555;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004705458.1;product=glycosyl transferase;protein_id=OWF92360.1;transl_table=11;translation=length.361
MWTO01000004	GenBank	exon	5069	6154	.	-	1	Parent=B4916_03555.t01
MWTO01000004	GenBank	gene	6164	7153	.	-	1	ID=B4916_03560;Name=B4916_03560
MWTO01000004	GenBank	mRNA	6164	7153	.	-	1	ID=B4916_03560.t01;Parent=B4916_03560
MWTO01000004	GenBank	CDS	6164	7153	.	-	1	ID=B4916_03560.p01;Parent=B4916_03560.t01;Name=B4916_03560;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:PF14897.4;product=hypothetical protein;protein_id=OWF92361.1;transl_table=11;translation=length.329
MWTO01000004	GenBank	exon	6164	7153	.	-	1	Parent=B4916_03560.t01
MWTO01000004	GenBank	gene	7302	8000	.	-	1	ID=B4916_03565;Name=B4916_03565
MWTO01000004	GenBank	mRNA	7302	8000	.	-	1	ID=B4916_03565.t01;Parent=B4916_03565
MWTO01000004	GenBank	CDS	7302	8000	.	-	1	ID=B4916_03565.p01;Parent=B4916_03565.t01;Name=B4916_03565;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:PF00535.24;product=hypothetical protein;protein_id=OWF92362.1;transl_table=11;translation=length.232
MWTO01000004	GenBank	exon	7302	8000	.	-	1	Parent=B4916_03565.t01
MWTO01000004	GenBank	gene	7991	8194	.	-	1	ID=B4916_03570;Name=B4916_03570
MWTO01000004	GenBank	mRNA	7991	8194	.	-	1	ID=B4916_03570.t01;Parent=B4916_03570
MWTO01000004	GenBank	CDS	7991	8194	.	-	1	ID=B4916_03570.p01;Parent=B4916_03570.t01;Name=B4916_03570;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:PF00535.24;product=hypothetical protein;protein_id=OWF92363.1;transl_table=11;translation=length.67
MWTO01000004	GenBank	exon	7991	8194	.	-	1	Parent=B4916_03570.t01
MWTO01000004	GenBank	gene	8668	8985	.	-	1	ID=B4916_03575;Name=B4916_03575
MWTO01000004	GenBank	mRNA	8668	8985	.	-	1	ID=B4916_03575.t01;Parent=B4916_03575
MWTO01000004	GenBank	CDS	8668	8985	.	-	1	ID=B4916_03575.p01;Parent=B4916_03575.t01;Name=B4916_03575;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:PF00535.24;product=hypothetical protein;protein_id=OWF92364.1;transl_table=11;translation=length.105
MWTO01000004	GenBank	exon	8668	8985	.	-	1	Parent=B4916_03575.t01
MWTO01000004	GenBank	gene	9033	9194	.	-	1	ID=B4916_03580;Name=B4916_03580
MWTO01000004	GenBank	mRNA	9033	9194	.	-	1	ID=B4916_03580.t01;Parent=B4916_03580
MWTO01000004	GenBank	CDS	9033	9194	.	-	1	ID=B4916_03580.p01;Parent=B4916_03580.t01;Name=B4916_03580;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:PF00535.24;product=hypothetical protein;protein_id=OWF92365.1;transl_table=11;translation=length.53
MWTO01000004	GenBank	exon	9033	9194	.	-	1	Parent=B4916_03580.t01
MWTO01000004	GenBank	pseudogenic_exon	9187	10408	.	-	1	ID=B4916_03585;Name=B4916_03585;Note=frameshifted%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005182329.1;product=lipid III flippase;pseudo=_no_value;transl_table=11
MWTO01000004	GenBank	pseudogene	9187	10408	.	-	1	ID=B4916_03585.pseudogene;Alias=B4916_03585;Name=B4916_03585;pseudo=_no_value
MWTO01000004	GenBank	gene	10441	11547	.	-	1	ID=B4916_03590;Name=B4916_03590
MWTO01000004	GenBank	mRNA	10441	11547	.	-	1	ID=B4916_03590.t01;Parent=B4916_03590
MWTO01000004	GenBank	CDS	10441	11547	.	-	1	ID=B4916_03590.p01;Parent=B4916_03590.t01;Name=B4916_03590;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004705462.1;product=aminotransferase;protein_id=OWF92366.1;transl_table=11;translation=length.368
MWTO01000004	GenBank	exon	10441	11547	.	-	1	Parent=B4916_03590.t01
MWTO01000004	GenBank	gene	11549	12085	.	-	1	ID=B4916_03595;Name=B4916_03595
MWTO01000004	GenBank	mRNA	11549	12085	.	-	1	ID=B4916_03595.t01;Parent=B4916_03595
MWTO01000004	GenBank	CDS	11549	12085	.	-	1	ID=B4916_03595.p01;Parent=B4916_03595.t01;Name=B4916_03595;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007869143.1;product=N-acetyltransferase;protein_id=OWF92367.1;transl_table=11;translation=length.178
MWTO01000004	GenBank	exon	11549	12085	.	-	1	Parent=B4916_03595.t01
MWTO01000004	GenBank	gene	12078	12482	.	-	1	ID=B4916_03600;Name=B4916_03600
MWTO01000004	GenBank	mRNA	12078	12482	.	-	1	ID=B4916_03600.t01;Parent=B4916_03600
MWTO01000004	GenBank	CDS	12078	12482	.	-	1	ID=B4916_03600.p01;Parent=B4916_03600.t01;Name=B4916_03600;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005182319.1;product=dTDP-6-deoxy-3%2C4-keto-hexulose isomerase;protein_id=OWF92368.1;transl_table=11;translation=length.134
MWTO01000004	GenBank	exon	12078	12482	.	-	1	Parent=B4916_03600.t01