##gff-version 3 ##sequence-region NZ_DS990119 1 28955 # conversion-by bp_genbank2gff3.pl # organism Phocaeicola plebeius DSM 17135 # Note Phocaeicola plebeius DSM 17135 Scfld_02_2, whole genome shotgun sequence. # date 06-OCT-2022 NZ_DS990119 GenBank region 1 28955 . + 1 ID=NZ_DS990119;Dbxref=BioProject:PRJNA224116,taxon:484018;Name=NZ_DS990119;Note=Phocaeicola plebeius DSM 17135 Scfld_02_2%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence is identical to DS990119.1. On Mar 3,2009 this sequence version replaced NW_002063610.1. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement (pre-finishing),along with manual improvement that includes breaking apart any mis-assembly,and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally,PCAP (Huang,et al,Genome Research,13:2164,(2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive,sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine,the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. For answers to your questions regarding this assembly or project,or any other GSC genome project,please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement(pre-finishing),along with manual improvement that includes breaking apart any mis-assembly,and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xlsequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally,PCAP (Huang,et al,Genome Research,13:2164,(2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive,sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine,the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project,or any other GSC genome project,please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in September 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 09:16:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset,GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,\nrepeat_region\nGenes (total) :: 3,688\nCDSs (total) :: 3,591\nGenes (coding) :: 3,539\nCDSs (with protein) :: 3,539\nGenes (RNA) :: 97\nrRNAs :: 6,5,6 (5S,16S,23S)\ncomplete rRNAs :: 6 (5S)\npartial rRNAs :: 5,6 (16S,23S)\ntRNAs :: 78\nncRNAs :: 2\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 15 of 52\nPseudo Genes (incomplete) :: 43 of 52\nPseudo Genes (internal stop) :: 4 of 52\nPseudo Genes (multiple problems) :: 8 of 52\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to DS990119.1. On Mar 3%2C 2009 this sequence version replaced NW_002063610.1. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement (pre-finishing)%2C along with manual improvement that includes breaking apart any mis-assembly%2C and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally%2C PCAP (Huang%2C et al%2C Genome Research%2C 13:2164%2C (2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive%2C sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine%2C the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. For answers to your questions regarding this assembly or project%2C or any other GSC genome project%2C please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement(pre-finishing)%2C along with manual improvement that includes breaking apart any mis-assembly%2C and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xlsequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally%2C PCAP (Huang%2C et al%2C Genome Research%2C 13:2164%2C (2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive%2C sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine%2C the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project%2C or any other GSC genome project%2C please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in September 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 09:16:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset%3B GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B\nrepeat_region\nGenes (total) :: 3%2C688\nCDSs (total) :: 3%2C591\nGenes (coding) :: 3%2C539\nCDSs (with protein) :: 3%2C539\nGenes (RNA) :: 97\nrRNAs :: 6%2C 5%2C 6 (5S%2C 16S%2C 23S)\ncomplete rRNAs :: 6 (5S)\npartial rRNAs :: 5%2C 6 (16S%2C 23S)\ntRNAs :: 78\nncRNAs :: 2\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 15 of 52\nPseudo Genes (incomplete) :: 43 of 52\nPseudo Genes (internal stop) :: 4 of 52\nPseudo Genes (multiple problems) :: 8 of 52\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##;date=06-OCT-2022;host=Homo sapiens;isolation_source=biological product [ENVO:02000043];mol_type=genomic DNA;organism=Phocaeicola plebeius DSM 17135;strain=DSM 17135;type_material=type strain of Bacteroides plebeius NZ_DS990119 GenBank gene 1 4227 . - 1 ID=BACPLE_RS02415;Name=BACPLE_RS02415;old_locus_tag=BACPLE_00983 NZ_DS990119 GenBank mRNA 1 4227 . - 1 ID=BACPLE_RS02415.t01;Parent=BACPLE_RS02415 NZ_DS990119 GenBank CDS 1 4227 . - 1 ID=BACPLE_RS02415;Parent=BACPLE_RS02415.t01;eC_number=2.7.13.3;gO_process=GO:0000160 - phosphorelay signal transduction system [Evidence IEA];Name=BACPLE_RS02415;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014567.2;old_locus_tag=BACPLE_00983;product=hybrid sensor histidine kinase/response regulator transcription factor;protein_id=WP_050792054.1;transl_table=11;translation=length.1408 NZ_DS990119 GenBank exon 1 4227 . - 1 Parent=BACPLE_RS02415.t01 NZ_DS990119 GenBank gene 4547 6031 . - 1 ID=BACPLE_RS02420;Name=BACPLE_RS02420;old_locus_tag=BACPLE_00984 NZ_DS990119 GenBank mRNA 4547 6031 . - 1 ID=BACPLE_RS02420.t01;Parent=BACPLE_RS02420 NZ_DS990119 GenBank CDS 4547 6031 . - 1 ID=BACPLE_RS02420;Parent=BACPLE_RS02420.t01;Name=BACPLE_RS02420;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BACPLE_00984;product=hypothetical protein;protein_id=WP_081458090.1;transl_table=11;translation=length.494 NZ_DS990119 GenBank exon 4547 6031 . - 1 Parent=BACPLE_RS02420.t01 NZ_DS990119 GenBank gene 6215 8047 . + 1 ID=BACPLE_RS02425;Name=BACPLE_RS02425;old_locus_tag=BACPLE_00985 NZ_DS990119 GenBank mRNA 6215 8047 . + 1 ID=BACPLE_RS02425.t01;Parent=BACPLE_RS02425 NZ_DS990119 GenBank CDS 6215 8047 . + 1 ID=BACPLE_RS02425;Parent=BACPLE_RS02425.t01;Name=BACPLE_RS02425;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007480018.1;old_locus_tag=BACPLE_00985;product=glycoside hydrolase family 2 TIM barrel-domain containing protein;protein_id=WP_148374629.1;transl_table=11;translation=length.610 NZ_DS990119 GenBank exon 6215 8047 . + 1 Parent=BACPLE_RS02425.t01 NZ_DS990119 GenBank gene 8065 9495 . + 1 ID=BACPLE_RS02430;Name=BACPLE_RS02430;old_locus_tag=BACPLE_00986 NZ_DS990119 GenBank mRNA 8065 9495 . + 1 ID=BACPLE_RS02430.t01;Parent=BACPLE_RS02430 NZ_DS990119 GenBank CDS 8065 9495 . + 1 ID=BACPLE_RS02430;Parent=BACPLE_RS02430.t01;Name=BACPLE_RS02430;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF013080.2;old_locus_tag=BACPLE_00986;product=sulfatase;protein_id=WP_007558596.1;transl_table=11;translation=length.476 NZ_DS990119 GenBank exon 8065 9495 . + 1 Parent=BACPLE_RS02430.t01 NZ_DS990119 GenBank gene 9589 11025 . + 1 ID=BACPLE_RS02435;Name=BACPLE_RS02435;old_locus_tag=BACPLE_00987 NZ_DS990119 GenBank mRNA 9589 11025 . + 1 ID=BACPLE_RS02435.t01;Parent=BACPLE_RS02435 NZ_DS990119 GenBank CDS 9589 11025 . + 1 ID=BACPLE_RS02435;Parent=BACPLE_RS02435.t01;Name=BACPLE_RS02435;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF027814.2;old_locus_tag=BACPLE_00987;product=glycoside hydrolase family 27 protein;protein_id=WP_007558600.1;transl_table=11;translation=length.478 NZ_DS990119 GenBank exon 9589 11025 . + 1 Parent=BACPLE_RS02435.t01 NZ_DS990119 GenBank gene 11043 13022 . + 1 ID=BACPLE_RS02440;Name=BACPLE_RS02440;old_locus_tag=BACPLE_00989 NZ_DS990119 GenBank mRNA 11043 13022 . + 1 ID=BACPLE_RS02440.t01;Parent=BACPLE_RS02440 NZ_DS990119 GenBank CDS 11043 13022 . + 1 ID=BACPLE_RS02440;Parent=BACPLE_RS02440.t01;gO_function=GO:0004553 - hydrolase activity%2C hydrolyzing O-glycosyl compounds [Evidence IEA];gO_process=GO:0005975 - carbohydrate metabolic process [Evidence IEA];Name=BACPLE_RS02440;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF016497.2;old_locus_tag=BACPLE_00989;product=family 43 glycosylhydrolase;protein_id=WP_007558602.1;transl_table=11;translation=length.659 NZ_DS990119 GenBank exon 11043 13022 . + 1 Parent=BACPLE_RS02440.t01 NZ_DS990119 GenBank gene 13133 14512 . + 1 ID=BACPLE_RS02445;Name=BACPLE_RS02445;old_locus_tag=BACPLE_00990 NZ_DS990119 GenBank mRNA 13133 14512 . + 1 ID=BACPLE_RS02445.t01;Parent=BACPLE_RS02445 NZ_DS990119 GenBank CDS 13133 14512 . + 1 ID=BACPLE_RS02445;Parent=BACPLE_RS02445.t01;gO_function=GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA];Name=BACPLE_RS02445;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017140974.1;old_locus_tag=BACPLE_00990;product=sulfatase-like hydrolase/transferase;protein_id=WP_007558604.1;transl_table=11;translation=length.459 NZ_DS990119 GenBank exon 13133 14512 . + 1 Parent=BACPLE_RS02445.t01 NZ_DS990119 GenBank gene 14612 16669 . - 1 ID=BACPLE_RS02450;Name=BACPLE_RS02450;old_locus_tag=BACPLE_00991 NZ_DS990119 GenBank mRNA 14612 16669 . - 1 ID=BACPLE_RS02450.t01;Parent=BACPLE_RS02450 NZ_DS990119 GenBank CDS 14612 16669 . - 1 ID=BACPLE_RS02450;Parent=BACPLE_RS02450.t01;Name=BACPLE_RS02450;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF017502.2;old_locus_tag=BACPLE_00991;product=Sip1-related alpha-galactosidase;protein_id=WP_007558606.1;transl_table=11;translation=length.685 NZ_DS990119 GenBank exon 14612 16669 . - 1 Parent=BACPLE_RS02450.t01 NZ_DS990119 GenBank gene 16687 18060 . - 1 ID=BACPLE_RS02455;Name=BACPLE_RS02455;old_locus_tag=BACPLE_00992 NZ_DS990119 GenBank mRNA 16687 18060 . - 1 ID=BACPLE_RS02455.t01;Parent=BACPLE_RS02455 NZ_DS990119 GenBank CDS 16687 18060 . - 1 ID=BACPLE_RS02455;Parent=BACPLE_RS02455.t01;gO_function=GO:0004650 - polygalacturonase activity [Evidence IEA];gO_process=GO:0005975 - carbohydrate metabolic process [Evidence IEA];Name=BACPLE_RS02455;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012516.2;old_locus_tag=BACPLE_00992;product=glycosyl hydrolase family 28 protein;protein_id=WP_007558608.1;transl_table=11;translation=length.457 NZ_DS990119 GenBank exon 16687 18060 . - 1 Parent=BACPLE_RS02455.t01 NZ_DS990119 GenBank gene 18085 19089 . - 1 ID=BACPLE_RS02460;Name=BACPLE_RS02460;old_locus_tag=BACPLE_00993 NZ_DS990119 GenBank mRNA 18085 19089 . - 1 ID=BACPLE_RS02460.t01;Parent=BACPLE_RS02460 NZ_DS990119 GenBank CDS 18085 19089 . - 1 ID=BACPLE_RS02460;Parent=BACPLE_RS02460.t01;gO_function=GO:0004553 - hydrolase activity%2C hydrolyzing O-glycosyl compounds [Evidence IEA];gO_process=GO:0005975 - carbohydrate metabolic process [Evidence IEA];Name=BACPLE_RS02460;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF016497.2;old_locus_tag=BACPLE_00993;product=family 43 glycosylhydrolase;protein_id=WP_007558610.1;transl_table=11;translation=length.334 NZ_DS990119 GenBank exon 18085 19089 . - 1 Parent=BACPLE_RS02460.t01 NZ_DS990119 GenBank gene 19138 19932 . - 1 ID=BACPLE_RS02465;Name=BACPLE_RS02465;old_locus_tag=BACPLE_00994 NZ_DS990119 GenBank mRNA 19138 19932 . - 1 ID=BACPLE_RS02465.t01;Parent=BACPLE_RS02465 NZ_DS990119 GenBank CDS 19138 19932 . - 1 ID=BACPLE_RS02465;Parent=BACPLE_RS02465.t01;Name=BACPLE_RS02465;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BACPLE_00994;product=hypothetical protein;protein_id=WP_007558613.1;transl_table=11;translation=length.264 NZ_DS990119 GenBank exon 19138 19932 . - 1 Parent=BACPLE_RS02465.t01 NZ_DS990119 GenBank gene 19938 20237 . - 1 ID=BACPLE_RS19600;Name=BACPLE_RS19600;old_locus_tag=BACPLE_00995 NZ_DS990119 GenBank mRNA 19938 20237 . - 1 ID=BACPLE_RS19600.t01;Parent=BACPLE_RS19600 NZ_DS990119 GenBank CDS 19938 20237 . - 1 ID=BACPLE_RS19600;Parent=BACPLE_RS19600.t01;Name=BACPLE_RS19600;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BACPLE_00995;product=hypothetical protein;protein_id=WP_007558614.1;transl_table=11;translation=length.99 NZ_DS990119 GenBank exon 19938 20237 . - 1 Parent=BACPLE_RS19600.t01 NZ_DS990119 GenBank gene 20274 21080 . - 1 ID=BACPLE_RS02470;Name=BACPLE_RS02470;old_locus_tag=BACPLE_00996 NZ_DS990119 GenBank mRNA 20274 21080 . - 1 ID=BACPLE_RS02470.t01;Parent=BACPLE_RS02470 NZ_DS990119 GenBank CDS 20274 21080 . - 1 ID=BACPLE_RS02470;Parent=BACPLE_RS02470.t01;Name=BACPLE_RS02470;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BACPLE_00996;product=aldose 1-epimerase;protein_id=WP_148374630.1;transl_table=11;translation=length.268 NZ_DS990119 GenBank exon 20274 21080 . - 1 Parent=BACPLE_RS02470.t01 NZ_DS990119 GenBank gene 21223 24147 . - 1 ID=BACPLE_RS02475;Name=BACPLE_RS02475;old_locus_tag=BACPLE_00997 NZ_DS990119 GenBank mRNA 21223 24147 . - 1 ID=BACPLE_RS02475.t01;Parent=BACPLE_RS02475 NZ_DS990119 GenBank CDS 21223 24147 . - 1 ID=BACPLE_RS02475;Parent=BACPLE_RS02475.t01;Name=BACPLE_RS02475;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014850.2;old_locus_tag=BACPLE_00997;product=glycoside hydrolase family 2;protein_id=WP_007558618.1;transl_table=11;translation=length.974 NZ_DS990119 GenBank exon 21223 24147 . - 1 Parent=BACPLE_RS02475.t01 NZ_DS990119 GenBank gene 24264 25916 . - 1 ID=BACPLE_RS02480;Name=BACPLE_RS02480;old_locus_tag=BACPLE_00998 NZ_DS990119 GenBank mRNA 24264 25916 . - 1 ID=BACPLE_RS02480.t01;Parent=BACPLE_RS02480 NZ_DS990119 GenBank CDS 24264 25916 . - 1 ID=BACPLE_RS02480;Parent=BACPLE_RS02480.t01;Name=BACPLE_RS02480;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF025680.2;old_locus_tag=BACPLE_00998;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_167535712.1;transl_table=11;translation=length.550 NZ_DS990119 GenBank exon 24264 25916 . - 1 Parent=BACPLE_RS02480.t01 NZ_DS990119 GenBank gene 25935 28955 . - 1 ID=BACPLE_RS02485;Name=BACPLE_RS02485;old_locus_tag=BACPLE_00999 NZ_DS990119 GenBank mRNA 25935 28955 . - 1 ID=BACPLE_RS02485.t01;Parent=BACPLE_RS02485 NZ_DS990119 GenBank CDS 25935 28955 . - 1 ID=BACPLE_RS02485;Parent=BACPLE_RS02485.t01;Name=BACPLE_RS02485;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:TIGR04056.1;old_locus_tag=BACPLE_00999;product=TonB-dependent receptor;protein_id=WP_007558622.1;transl_table=11;translation=length.1006 NZ_DS990119 GenBank exon 25935 28955 . - 1 Parent=BACPLE_RS02485.t01