##gff-version 3
##sequence-region NC_016776 1 20243
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis 638R
# Note Bacteroides fragilis 638R, complete sequence.
# date 17-FEB-2020
NC_016776	GenBank	region	1	20243	.	+	1	ID=NC_016776;Dbxref=BioProject:PRJNA224116,taxon:862962;Name=NC_016776;Note=Bacteroides fragilis 638R%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,439 CDSs (total) :: 4,346 Genes (coding) :: 4,241 CDSs (with protein) :: 4,241 Genes (RNA) :: 93 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C439 CDSs (total) :: 4%2C346 Genes (coding) :: 4%2C241 CDSs (with protein) :: 4%2C241 Genes (RNA) :: 93 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-FEB-2020;mol_type=genomic DNA;organism=Bacteroides fragilis 638R;strain=638R
NC_016776	GenBank	gene	1	885	.	+	1	ID=BF638R_RS05055;Name=rfbA;locus_tag=BF638R_RS05055;old_locus_tag=BF638R_1076
NC_016776	GenBank	mRNA	1	885	.	+	1	ID=BF638R_RS05055.t01;Parent=BF638R_RS05055
NC_016776	GenBank	CDS	1	885	.	+	1	ID=BF638R_RS05055.p01;Parent=BF638R_RS05055.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795876.1;locus_tag=BF638R_RS05055;old_locus_tag=BF638R_1076;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_005795876.1;transl_table=11;translation=length.294
NC_016776	GenBank	exon	1	885	.	+	1	Parent=BF638R_RS05055.t01
NC_016776	GenBank	gene	1203	2732	.	+	1	ID=BF638R_RS05060;Name=BF638R_RS05060;old_locus_tag=BF638R_1077
NC_016776	GenBank	mRNA	1203	2732	.	+	1	ID=BF638R_RS05060.t01;Parent=BF638R_RS05060
NC_016776	GenBank	CDS	1203	2732	.	+	1	ID=BF638R_RS05060.p01;Parent=BF638R_RS05060.t01;Name=BF638R_RS05060;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202254.1;old_locus_tag=BF638R_1077;product=hypothetical protein;protein_id=WP_011202254.1;transl_table=11;translation=length.509
NC_016776	GenBank	exon	1203	2732	.	+	1	Parent=BF638R_RS05060.t01
NC_016776	GenBank	gene	2729	3838	.	+	1	ID=BF638R_RS05065;Name=BF638R_RS05065;old_locus_tag=BF638R_1078
NC_016776	GenBank	mRNA	2729	3838	.	+	1	ID=BF638R_RS05065.t01;Parent=BF638R_RS05065
NC_016776	GenBank	CDS	2729	3838	.	+	1	ID=BF638R_RS05065.p01;Parent=BF638R_RS05065.t01;Name=BF638R_RS05065;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202255.1;old_locus_tag=BF638R_1078;product=glycosyltransferase family 1 protein;protein_id=WP_005795872.1;transl_table=11;translation=length.369
NC_016776	GenBank	exon	2729	3838	.	+	1	Parent=BF638R_RS05065.t01
NC_016776	GenBank	gene	3877	4824	.	+	1	ID=BF638R_RS05070;Name=BF638R_RS05070;old_locus_tag=BF638R_1079
NC_016776	GenBank	mRNA	3877	4824	.	+	1	ID=BF638R_RS05070.t01;Parent=BF638R_RS05070
NC_016776	GenBank	CDS	3877	4824	.	+	1	ID=BF638R_RS05070.p01;Parent=BF638R_RS05070.t01;Name=BF638R_RS05070;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795870.1;old_locus_tag=BF638R_1079;product=glycosyl transferase;protein_id=WP_005795870.1;transl_table=11;translation=length.315
NC_016776	GenBank	exon	3877	4824	.	+	1	Parent=BF638R_RS05070.t01
NC_016776	GenBank	gene	4821	6257	.	+	1	ID=BF638R_RS05075;Name=BF638R_RS05075;old_locus_tag=BF638R_1080
NC_016776	GenBank	mRNA	4821	6257	.	+	1	ID=BF638R_RS05075.t01;Parent=BF638R_RS05075
NC_016776	GenBank	CDS	4821	6257	.	+	1	ID=BF638R_RS05075.p01;Parent=BF638R_RS05075.t01;Name=BF638R_RS05075;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202256.1;old_locus_tag=BF638R_1080;product=O-antigen polysaccharide polymerase Wzy;protein_id=WP_011202256.1;transl_table=11;translation=length.478
NC_016776	GenBank	exon	4821	6257	.	+	1	Parent=BF638R_RS05075.t01
NC_016776	GenBank	gene	6333	7559	.	+	1	ID=BF638R_RS05080;Name=wecC;locus_tag=BF638R_RS05080;old_locus_tag=BF638R_1081
NC_016776	GenBank	mRNA	6333	7559	.	+	1	ID=BF638R_RS05080.t01;Parent=BF638R_RS05080
NC_016776	GenBank	CDS	6333	7559	.	+	1	ID=BF638R_RS05080.p01;Parent=BF638R_RS05080.t01;eC_number=1.1.1.336;Name=wecC;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795861.1;locus_tag=BF638R_RS05080;old_locus_tag=BF638R_1081;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_005795861.1;transl_table=11;translation=length.408
NC_016776	GenBank	exon	6333	7559	.	+	1	Parent=BF638R_RS05080.t01
NC_016776	GenBank	gene	7556	8710	.	+	1	ID=BF638R_RS05085;Name=wecB;locus_tag=BF638R_RS05085;old_locus_tag=BF638R_1082
NC_016776	GenBank	mRNA	7556	8710	.	+	1	ID=BF638R_RS05085.t01;Parent=BF638R_RS05085
NC_016776	GenBank	CDS	7556	8710	.	+	1	ID=BF638R_RS05085.p01;Parent=BF638R_RS05085.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930807.1;locus_tag=BF638R_RS05085;old_locus_tag=BF638R_1082;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_005799504.1;transl_table=11;translation=length.384
NC_016776	GenBank	exon	7556	8710	.	+	1	Parent=BF638R_RS05085.t01
NC_016776	GenBank	gene	8707	9798	.	+	1	ID=BF638R_RS05090;Name=BF638R_RS05090;old_locus_tag=BF638R_1083
NC_016776	GenBank	mRNA	8707	9798	.	+	1	ID=BF638R_RS05090.t01;Parent=BF638R_RS05090
NC_016776	GenBank	CDS	8707	9798	.	+	1	ID=BF638R_RS05090.p01;Parent=BF638R_RS05090.t01;Name=BF638R_RS05090;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795857.1;old_locus_tag=BF638R_1083;product=glycosyltransferase;protein_id=WP_005795857.1;transl_table=11;translation=length.363
NC_016776	GenBank	exon	8707	9798	.	+	1	Parent=BF638R_RS05090.t01
NC_016776	GenBank	gene	9786	10217	.	+	1	ID=BF638R_RS05095;Name=BF638R_RS05095;old_locus_tag=BF638R_1084
NC_016776	GenBank	mRNA	9786	10217	.	+	1	ID=BF638R_RS05095.t01;Parent=BF638R_RS05095
NC_016776	GenBank	CDS	9786	10217	.	+	1	ID=BF638R_RS05095.p01;Parent=BF638R_RS05095.t01;Name=BF638R_RS05095;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795855.1;old_locus_tag=BF638R_1084;product=WxcM-like domain-containing protein;protein_id=WP_005795855.1;transl_table=11;translation=length.143
NC_016776	GenBank	exon	9786	10217	.	+	1	Parent=BF638R_RS05095.t01
NC_016776	GenBank	gene	10192	10617	.	+	1	ID=BF638R_RS05100;Name=BF638R_RS05100;old_locus_tag=BF638R_1085
NC_016776	GenBank	mRNA	10192	10617	.	+	1	ID=BF638R_RS05100.t01;Parent=BF638R_RS05100
NC_016776	GenBank	CDS	10192	10617	.	+	1	ID=BF638R_RS05100.p01;Parent=BF638R_RS05100.t01;Name=BF638R_RS05100;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009133374.1;old_locus_tag=BF638R_1085;product=WxcM-like domain-containing protein;protein_id=WP_011202258.1;transl_table=11;translation=length.141
NC_016776	GenBank	exon	10192	10617	.	+	1	Parent=BF638R_RS05100.t01
NC_016776	GenBank	gene	10614	11714	.	+	1	ID=BF638R_RS05105;Name=BF638R_RS05105;old_locus_tag=BF638R_1086
NC_016776	GenBank	mRNA	10614	11714	.	+	1	ID=BF638R_RS05105.t01;Parent=BF638R_RS05105
NC_016776	GenBank	CDS	10614	11714	.	+	1	ID=BF638R_RS05105.p01;Parent=BF638R_RS05105.t01;Name=BF638R_RS05105;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795850.1;old_locus_tag=BF638R_1086;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_005795850.1;transl_table=11;translation=length.366
NC_016776	GenBank	exon	10614	11714	.	+	1	Parent=BF638R_RS05105.t01
NC_016776	GenBank	gene	11711	12706	.	+	1	ID=BF638R_RS05110;Name=BF638R_RS05110;old_locus_tag=BF638R_1087
NC_016776	GenBank	mRNA	11711	12706	.	+	1	ID=BF638R_RS05110.t01;Parent=BF638R_RS05110
NC_016776	GenBank	CDS	11711	12706	.	+	1	ID=BF638R_RS05110.p01;Parent=BF638R_RS05110.t01;Name=BF638R_RS05110;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202259.1;old_locus_tag=BF638R_1087;product=glycosyl transferase;protein_id=WP_011202259.1;transl_table=11;translation=length.331
NC_016776	GenBank	exon	11711	12706	.	+	1	Parent=BF638R_RS05110.t01
NC_016776	GenBank	gene	12708	13733	.	+	1	ID=BF638R_RS05115;Name=BF638R_RS05115;old_locus_tag=BF638R_1088
NC_016776	GenBank	mRNA	12708	13733	.	+	1	ID=BF638R_RS05115.t01;Parent=BF638R_RS05115
NC_016776	GenBank	CDS	12708	13733	.	+	1	ID=BF638R_RS05115.p01;Parent=BF638R_RS05115.t01;Name=BF638R_RS05115;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005829185.1;old_locus_tag=BF638R_1088;product=polysaccharide biosynthesis protein;protein_id=WP_014298345.1;transl_table=11;translation=length.341
NC_016776	GenBank	exon	12708	13733	.	+	1	Parent=BF638R_RS05115.t01
NC_016776	GenBank	gene	13778	14929	.	+	1	ID=BF638R_RS05120;Name=BF638R_RS05120;old_locus_tag=BF638R_1089
NC_016776	GenBank	mRNA	13778	14929	.	+	1	ID=BF638R_RS05120.t01;Parent=BF638R_RS05120
NC_016776	GenBank	CDS	13778	14929	.	+	1	ID=BF638R_RS05120.p01;Parent=BF638R_RS05120.t01;Name=BF638R_RS05120;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298346.1;old_locus_tag=BF638R_1089;product=capsular polysaccharide biosynthesis protein CapF;protein_id=WP_014298346.1;transl_table=11;translation=length.383
NC_016776	GenBank	exon	13778	14929	.	+	1	Parent=BF638R_RS05120.t01
NC_016776	GenBank	gene	14937	16121	.	+	1	ID=BF638R_RS05125;Name=wecB;locus_tag=BF638R_RS05125;old_locus_tag=BF638R_1090
NC_016776	GenBank	mRNA	14937	16121	.	+	1	ID=BF638R_RS05125.t01;Parent=BF638R_RS05125
NC_016776	GenBank	CDS	14937	16121	.	+	1	ID=BF638R_RS05125.p01;Parent=BF638R_RS05125.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005820780.1;locus_tag=BF638R_RS05125;old_locus_tag=BF638R_1090;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_014298347.1;transl_table=11;translation=length.394
NC_016776	GenBank	exon	14937	16121	.	+	1	Parent=BF638R_RS05125.t01
NC_016776	GenBank	gene	16132	17340	.	+	1	ID=BF638R_RS05130;Name=BF638R_RS05130;old_locus_tag=BF638R_1091
NC_016776	GenBank	mRNA	16132	17340	.	+	1	ID=BF638R_RS05130.t01;Parent=BF638R_RS05130
NC_016776	GenBank	CDS	16132	17340	.	+	1	ID=BF638R_RS05130.p01;Parent=BF638R_RS05130.t01;Name=BF638R_RS05130;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005807485.1;old_locus_tag=BF638R_1091;product=glycosyltransferase family 4 protein;protein_id=WP_014298348.1;transl_table=11;translation=length.402
NC_016776	GenBank	exon	16132	17340	.	+	1	Parent=BF638R_RS05130.t01
NC_016776	GenBank	gene	17343	17951	.	+	1	ID=BF638R_RS05135;Name=BF638R_RS05135;old_locus_tag=BF638R_1092
NC_016776	GenBank	mRNA	17343	17951	.	+	1	ID=BF638R_RS05135.t01;Parent=BF638R_RS05135
NC_016776	GenBank	CDS	17343	17951	.	+	1	ID=BF638R_RS05135.p01;Parent=BF638R_RS05135.t01;Name=BF638R_RS05135;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007485209.1;old_locus_tag=BF638R_1092;product=sugar transferase;protein_id=WP_011202264.1;transl_table=11;translation=length.202
NC_016776	GenBank	exon	17343	17951	.	+	1	Parent=BF638R_RS05135.t01
NC_016776	GenBank	gene	17964	18548	.	+	1	ID=BF638R_RS05140;Name=BF638R_RS05140;old_locus_tag=BF638R_1093
NC_016776	GenBank	mRNA	17964	18548	.	+	1	ID=BF638R_RS05140.t01;Parent=BF638R_RS05140
NC_016776	GenBank	CDS	17964	18548	.	+	1	ID=BF638R_RS05140.p01;Parent=BF638R_RS05140.t01;Name=BF638R_RS05140;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005807481.1;old_locus_tag=BF638R_1093;product=acetyltransferase;protein_id=WP_005795841.1;transl_table=11;translation=length.194
NC_016776	GenBank	exon	17964	18548	.	+	1	Parent=BF638R_RS05140.t01
NC_016776	GenBank	gene	18562	19692	.	+	1	ID=BF638R_RS05145;Name=BF638R_RS05145;old_locus_tag=BF638R_1094
NC_016776	GenBank	mRNA	18562	19692	.	+	1	ID=BF638R_RS05145.t01;Parent=BF638R_RS05145
NC_016776	GenBank	CDS	18562	19692	.	+	1	ID=BF638R_RS05145.p01;Parent=BF638R_RS05145.t01;Name=BF638R_RS05145;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007485218.1;old_locus_tag=BF638R_1094;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_005795839.1;transl_table=11;translation=length.376
NC_016776	GenBank	exon	18562	19692	.	+	1	Parent=BF638R_RS05145.t01
NC_016776	GenBank	gene	19740	20243	.	+	1	ID=BF638R_RS05150;Name=BF638R_RS05150;old_locus_tag=BF638R_1095
NC_016776	GenBank	mRNA	19740	20243	.	+	1	ID=BF638R_RS05150.t01;Parent=BF638R_RS05150
NC_016776	GenBank	CDS	19740	20243	.	+	1	ID=BF638R_RS05150.p01;Parent=BF638R_RS05150.t01;Name=BF638R_RS05150;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202266.1;old_locus_tag=BF638R_1095;product=hypothetical protein;protein_id=WP_005795836.1;transl_table=11;translation=length.167
NC_016776	GenBank	exon	19740	20243	.	+	1	Parent=BF638R_RS05150.t01