##gff-version 3 ##sequence-region NZ_JH992941 1 18105 # conversion-by bp_genbank2gff3.pl # organism Bacteroides oleiciplenus YIT 12058 # Note Bacteroides oleiciplenus YIT 12058 supercont1.2, whole genome shotgun sequence. # date 02-APR-2021 NZ_JH992941 GenBank region 1 18105 . + 1 ID=NZ_JH992941;Dbxref=BioProject:PRJNA224116,HMP:9447,taxon:742727;Name=NZ_JH992941;Note=Bacteroides oleiciplenus YIT 12058 supercont1.2%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence is identical to JH992941.1. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Morotomi,M. (Yakult Central Institute for Microbiological Research,Japan). Bacteria provided by Morotomi,M. (Yakult Central Institute for Microbiological Research,Japan). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: allpaths v. R40371\nAssembly Name :: Bact_olei_YIT_12058_V1\nGenome Coverage :: 75x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to JH992941.1. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Morotomi%2C M. (Yakult Central Institute for Microbiological Research%2C Japan). Bacteria provided by Morotomi%2C M. (Yakult Central Institute for Microbiological Research%2C Japan). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: allpaths v. R40371\nAssembly Name :: Bact_olei_YIT_12058_V1\nGenome Coverage :: 75x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;date=02-APR-2021;host=Homo sapiens;isolation_source=biological product [ENVO:02000043];mol_type=genomic DNA;organism=Bacteroides oleiciplenus YIT 12058;strain=YIT 12058;submitter_seqid=supercont1.2;type_material=type strain of Bacteroides oleiciplenus NZ_JH992941 GenBank gene 1 4098 . - 1 ID=HMPREF9447_RS12390;Name=HMPREF9447_RS12390;old_locus_tag=HMPREF9447_02525 NZ_JH992941 GenBank mRNA 1 4098 . - 1 ID=HMPREF9447_RS12390;Parent=HMPREF9447_RS12390 NZ_JH992941 GenBank CDS 1 4098 . - 1 ID=HMPREF9447_RS12390;Parent=HMPREF9447_RS12390;Name=HMPREF9447_RS12390;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007661009.1;old_locus_tag=HMPREF9447_02525;product=response regulator;protein_id=WP_148374815.1;transl_table=11;translation=length.1365 NZ_JH992941 GenBank exon 1 4098 . - 1 Parent=HMPREF9447_RS12390 NZ_JH992941 GenBank gene 4128 5459 . - 1 ID=HMPREF9447_RS12395;Name=HMPREF9447_RS12395;old_locus_tag=HMPREF9447_02526 NZ_JH992941 GenBank mRNA 4128 5459 . - 1 ID=HMPREF9447_RS12395;Parent=HMPREF9447_RS12395 NZ_JH992941 GenBank CDS 4128 5459 . - 1 ID=HMPREF9447_RS12395;Parent=HMPREF9447_RS12395;Name=HMPREF9447_RS12395;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007661008.1;old_locus_tag=HMPREF9447_02526;product=family 43 glycosylhydrolase;protein_id=WP_009130084.1;transl_table=11;translation=length.443 NZ_JH992941 GenBank exon 4128 5459 . - 1 Parent=HMPREF9447_RS12395 NZ_JH992941 GenBank gene 5559 8147 . - 1 ID=HMPREF9447_RS12400;Name=HMPREF9447_RS12400;old_locus_tag=HMPREF9447_02527 NZ_JH992941 GenBank mRNA 5559 8147 . - 1 ID=HMPREF9447_RS12400;Parent=HMPREF9447_RS12400 NZ_JH992941 GenBank CDS 5559 8147 . - 1 ID=HMPREF9447_RS12400;Parent=HMPREF9447_RS12400;Name=HMPREF9447_RS12400;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007411427.1;old_locus_tag=HMPREF9447_02527;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=WP_009130085.1;transl_table=11;translation=length.862 NZ_JH992941 GenBank exon 5559 8147 . - 1 Parent=HMPREF9447_RS12400 NZ_JH992941 GenBank gene 8199 9251 . - 1 ID=HMPREF9447_RS12405;Name=HMPREF9447_RS12405;old_locus_tag=HMPREF9447_02528 NZ_JH992941 GenBank mRNA 8199 9251 . - 1 ID=HMPREF9447_RS12405;Parent=HMPREF9447_RS12405 NZ_JH992941 GenBank CDS 8199 9251 . - 1 ID=HMPREF9447_RS12405;Parent=HMPREF9447_RS12405;Name=HMPREF9447_RS12405;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007661006.1;old_locus_tag=HMPREF9447_02528;product=glycoside hydrolase family 43 protein;protein_id=WP_009130086.1;transl_table=11;translation=length.350 NZ_JH992941 GenBank exon 8199 9251 . - 1 Parent=HMPREF9447_RS12405 NZ_JH992941 GenBank gene 9301 9609 . - 1 ID=HMPREF9447_RS12410;Name=HMPREF9447_RS12410;old_locus_tag=HMPREF9447_02529 NZ_JH992941 GenBank mRNA 9301 9609 . - 1 ID=HMPREF9447_RS12410;Parent=HMPREF9447_RS12410 NZ_JH992941 GenBank CDS 9301 9609 . - 1 ID=HMPREF9447_RS12410;Parent=HMPREF9447_RS12410;Name=HMPREF9447_RS12410;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=HMPREF9447_02529;product=hypothetical protein;protein_id=WP_009130087.1;transl_table=11;translation=length.102 NZ_JH992941 GenBank exon 9301 9609 . - 1 Parent=HMPREF9447_RS12410 NZ_JH992941 GenBank gene 9716 11167 . - 1 ID=HMPREF9447_RS12415;Name=HMPREF9447_RS12415;old_locus_tag=HMPREF9447_02530 NZ_JH992941 GenBank mRNA 9716 11167 . - 1 ID=HMPREF9447_RS12415;Parent=HMPREF9447_RS12415 NZ_JH992941 GenBank CDS 9716 11167 . - 1 ID=HMPREF9447_RS12415;Parent=HMPREF9447_RS12415;Name=HMPREF9447_RS12415;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004292093.1;old_locus_tag=HMPREF9447_02530;product=family 43 glycosylhydrolase;protein_id=WP_009130088.1;transl_table=11;translation=length.483 NZ_JH992941 GenBank exon 9716 11167 . - 1 Parent=HMPREF9447_RS12415 NZ_JH992941 GenBank gene 11170 11868 . - 1 ID=HMPREF9447_RS12420;Name=HMPREF9447_RS12420;old_locus_tag=HMPREF9447_02531 NZ_JH992941 GenBank mRNA 11170 11868 . - 1 ID=HMPREF9447_RS12420;Parent=HMPREF9447_RS12420 NZ_JH992941 GenBank CDS 11170 11868 . - 1 ID=HMPREF9447_RS12420;Parent=HMPREF9447_RS12420;Name=HMPREF9447_RS12420;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004292094.1;old_locus_tag=HMPREF9447_02531;product=hypothetical protein;protein_id=WP_009130089.1;transl_table=11;translation=length.232 NZ_JH992941 GenBank exon 11170 11868 . - 1 Parent=HMPREF9447_RS12420 NZ_JH992941 GenBank gene 11897 13054 . - 1 ID=HMPREF9447_RS12425;Name=HMPREF9447_RS12425;old_locus_tag=HMPREF9447_02532 NZ_JH992941 GenBank mRNA 11897 13054 . - 1 ID=HMPREF9447_RS12425;Parent=HMPREF9447_RS12425 NZ_JH992941 GenBank CDS 11897 13054 . - 1 ID=HMPREF9447_RS12425;Parent=HMPREF9447_RS12425;Name=HMPREF9447_RS12425;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007216407.1;old_locus_tag=HMPREF9447_02532;product=hypothetical protein;protein_id=WP_009130090.1;transl_table=11;translation=length.385 NZ_JH992941 GenBank exon 11897 13054 . - 1 Parent=HMPREF9447_RS12425 NZ_JH992941 GenBank gene 13109 14908 . - 1 ID=HMPREF9447_RS12430;Name=HMPREF9447_RS12430;old_locus_tag=HMPREF9447_02533 NZ_JH992941 GenBank mRNA 13109 14908 . - 1 ID=HMPREF9447_RS12430;Parent=HMPREF9447_RS12430 NZ_JH992941 GenBank CDS 13109 14908 . - 1 ID=HMPREF9447_RS12430;Parent=HMPREF9447_RS12430;Name=HMPREF9447_RS12430;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF019592.1%2CHMM:NF025680.1;old_locus_tag=HMPREF9447_02533;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_009130091.1;transl_table=11;translation=length.599 NZ_JH992941 GenBank exon 13109 14908 . - 1 Parent=HMPREF9447_RS12430 NZ_JH992941 GenBank gene 14929 18105 . - 1 ID=HMPREF9447_RS12435;Name=HMPREF9447_RS12435;old_locus_tag=HMPREF9447_02534 NZ_JH992941 GenBank mRNA 14929 18105 . - 1 ID=HMPREF9447_RS12435;Parent=HMPREF9447_RS12435 NZ_JH992941 GenBank CDS 14929 18105 . - 1 ID=HMPREF9447_RS12435;Parent=HMPREF9447_RS12435;Name=HMPREF9447_RS12435;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:TIGR04056.1;old_locus_tag=HMPREF9447_02534;product=TonB-dependent receptor;protein_id=WP_009130092.1;transl_table=11;translation=length.1058 NZ_JH992941 GenBank exon 14929 18105 . - 1 Parent=HMPREF9447_RS12435