##gff-version 3 ##sequence-region NZ_KB290658 1 11559 # conversion-by bp_genbank2gff3.pl # organism Anaerostipes hadrus DSM 3319 # Note Anaerostipes hadrus DSM 3319 Scfld111, whole genome shotgun sequence. # date 19-MAR-2021 NZ_KB290658 GenBank region 1 11559 . + 1 ID=NZ_KB290658;Dbxref=BioProject:PRJNA224116,HMP:0369,taxon:649757;Name=NZ_KB290658;Note=Anaerostipes hadrus DSM 3319 Scfld111%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence is identical to KB290658.1. Anaerostipes hadrus DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology,University of Guelph,Ontario,Canada),and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56),psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI),National Institutes of Health (NIH) is funding the sequence characterization of the Anaerostipes hadrus DSM 3319 genome. Eubacterium hadrum DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology,University of Guelph,Ontario,Canada),and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56),psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI),National Institutes of Health (NIH) is funding the sequence characterization of the Eubacterium hadrum DSM 3319 genome. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: Velvet v. 1.1.04\nGenome Coverage :: 103x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to KB290658.1. Anaerostipes hadrus DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology%2C University of Guelph%2C Ontario%2C Canada)%2C and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56)%2C psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI)%2C National Institutes of Health (NIH) is funding the sequence characterization of the Anaerostipes hadrus DSM 3319 genome. Eubacterium hadrum DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology%2C University of Guelph%2C Ontario%2C Canada)%2C and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56)%2C psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI)%2C National Institutes of Health (NIH) is funding the sequence characterization of the Eubacterium hadrum DSM 3319 genome. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: Velvet v. 1.1.04\nGenome Coverage :: 103x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;culture_collection=ATCC:29173;date=19-MAR-2021;host=Homo sapiens;isolation_source=stool%2C GI tract;mol_type=genomic DNA;organism=Anaerostipes hadrus DSM 3319;strain=DSM 3319;submitter_seqid=Scfld111;type_material=type strain of Anaerostipes hadrus NZ_KB290658 GenBank gene 1 981 . + 1 ID=HMPREF0369_RS06055;Name=HMPREF0369_RS06055;old_locus_tag=HMPREF0369_01258 NZ_KB290658 GenBank mRNA 1 981 . + 1 ID=HMPREF0369_RS06055;Parent=HMPREF0369_RS06055 NZ_KB290658 GenBank CDS 1 981 . + 1 ID=HMPREF0369_RS06055;Parent=HMPREF0369_RS06055;Name=HMPREF0369_RS06055;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008390543.1;old_locus_tag=HMPREF0369_01258;product=sugar ABC transporter substrate-binding protein;protein_id=WP_009203603.1;transl_table=11;translation=length.326 NZ_KB290658 GenBank exon 1 981 . + 1 Parent=HMPREF0369_RS06055 NZ_KB290658 GenBank gene 994 2316 . + 1 ID=HMPREF0369_RS06060;Name=HMPREF0369_RS06060;old_locus_tag=HMPREF0369_01259 NZ_KB290658 GenBank mRNA 994 2316 . + 1 ID=HMPREF0369_RS06060;Parent=HMPREF0369_RS06060 NZ_KB290658 GenBank CDS 994 2316 . + 1 ID=HMPREF0369_RS06060;Parent=HMPREF0369_RS06060;Name=HMPREF0369_RS06060;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015530814.1;old_locus_tag=HMPREF0369_01259;product=sensor histidine kinase;protein_id=WP_008390541.1;transl_table=11;translation=length.440 NZ_KB290658 GenBank exon 994 2316 . + 1 Parent=HMPREF0369_RS06060 NZ_KB290658 GenBank gene 2313 2981 . + 1 ID=HMPREF0369_RS06065;Name=HMPREF0369_RS06065;old_locus_tag=HMPREF0369_01260 NZ_KB290658 GenBank mRNA 2313 2981 . + 1 ID=HMPREF0369_RS06065;Parent=HMPREF0369_RS06065 NZ_KB290658 GenBank CDS 2313 2981 . + 1 ID=HMPREF0369_RS06065;Parent=HMPREF0369_RS06065;Name=HMPREF0369_RS06065;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009203604.1;old_locus_tag=HMPREF0369_01260;product=response regulator transcription factor;protein_id=WP_009203604.1;transl_table=11;translation=length.222 NZ_KB290658 GenBank exon 2313 2981 . + 1 Parent=HMPREF0369_RS06065 NZ_KB290658 GenBank gene 2982 4301 . + 1 ID=HMPREF0369_RS06070;Name=HMPREF0369_RS06070;old_locus_tag=HMPREF0369_01261 NZ_KB290658 GenBank mRNA 2982 4301 . + 1 ID=HMPREF0369_RS06070;Parent=HMPREF0369_RS06070 NZ_KB290658 GenBank CDS 2982 4301 . + 1 ID=HMPREF0369_RS06070;Parent=HMPREF0369_RS06070;Name=HMPREF0369_RS06070;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009203605.1;old_locus_tag=HMPREF0369_01261;product=extracellular solute-binding protein;protein_id=WP_009203605.1;transl_table=11;translation=length.439 NZ_KB290658 GenBank exon 2982 4301 . + 1 Parent=HMPREF0369_RS06070 NZ_KB290658 GenBank gene 4463 4897 . + 1 ID=HMPREF0369_RS06075;Name=HMPREF0369_RS06075;old_locus_tag=HMPREF0369_01262 NZ_KB290658 GenBank mRNA 4463 4897 . + 1 ID=HMPREF0369_RS06075;Parent=HMPREF0369_RS06075 NZ_KB290658 GenBank CDS 4463 4897 . + 1 ID=HMPREF0369_RS06075;Parent=HMPREF0369_RS06075;Name=HMPREF0369_RS06075;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008390535.1;old_locus_tag=HMPREF0369_01262;product=PTS fructose transporter subunit IIA;protein_id=WP_008390535.1;transl_table=11;translation=length.144 NZ_KB290658 GenBank exon 4463 4897 . + 1 Parent=HMPREF0369_RS06075 NZ_KB290658 GenBank gene 4918 5415 . + 1 ID=HMPREF0369_RS06080;Name=HMPREF0369_RS06080;old_locus_tag=HMPREF0369_01263 NZ_KB290658 GenBank mRNA 4918 5415 . + 1 ID=HMPREF0369_RS06080;Parent=HMPREF0369_RS06080 NZ_KB290658 GenBank CDS 4918 5415 . + 1 ID=HMPREF0369_RS06080;Parent=HMPREF0369_RS06080;Name=HMPREF0369_RS06080;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009203606.1;old_locus_tag=HMPREF0369_01263;product=PTS sugar transporter subunit IIB;protein_id=WP_009203606.1;transl_table=11;translation=length.165 NZ_KB290658 GenBank exon 4918 5415 . + 1 Parent=HMPREF0369_RS06080 NZ_KB290658 GenBank gene 5442 6296 . + 1 ID=HMPREF0369_RS06085;Name=HMPREF0369_RS06085;old_locus_tag=HMPREF0369_01264 NZ_KB290658 GenBank mRNA 5442 6296 . + 1 ID=HMPREF0369_RS06085;Parent=HMPREF0369_RS06085 NZ_KB290658 GenBank CDS 5442 6296 . + 1 ID=HMPREF0369_RS06085;Parent=HMPREF0369_RS06085;Name=HMPREF0369_RS06085;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008390531.1;old_locus_tag=HMPREF0369_01264;product=PTS sugar transporter subunit IIC;protein_id=WP_008390531.1;transl_table=11;translation=length.284 NZ_KB290658 GenBank exon 5442 6296 . + 1 Parent=HMPREF0369_RS06085 NZ_KB290658 GenBank gene 6298 7134 . + 1 ID=HMPREF0369_RS06090;Name=HMPREF0369_RS06090;old_locus_tag=HMPREF0369_01265 NZ_KB290658 GenBank mRNA 6298 7134 . + 1 ID=HMPREF0369_RS06090;Parent=HMPREF0369_RS06090 NZ_KB290658 GenBank CDS 6298 7134 . + 1 ID=HMPREF0369_RS06090;Parent=HMPREF0369_RS06090;Name=HMPREF0369_RS06090;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010964769.1;old_locus_tag=HMPREF0369_01265;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_009265455.1;transl_table=11;translation=length.278 NZ_KB290658 GenBank exon 6298 7134 . + 1 Parent=HMPREF0369_RS06090 NZ_KB290658 GenBank gene 7150 7434 . + 1 ID=HMPREF0369_RS06095;Name=HMPREF0369_RS06095;old_locus_tag=HMPREF0369_01266 NZ_KB290658 GenBank mRNA 7150 7434 . + 1 ID=HMPREF0369_RS06095;Parent=HMPREF0369_RS06095 NZ_KB290658 GenBank CDS 7150 7434 . + 1 ID=HMPREF0369_RS06095;Parent=HMPREF0369_RS06095;Name=HMPREF0369_RS06095;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015530817.1;old_locus_tag=HMPREF0369_01266;product=hypothetical protein;protein_id=WP_009203607.1;transl_table=11;translation=length.94 NZ_KB290658 GenBank exon 7150 7434 . + 1 Parent=HMPREF0369_RS06095 NZ_KB290658 GenBank gene 7516 11559 . + 1 ID=HMPREF0369_RS13555;Name=HMPREF0369_RS13555;old_locus_tag=HMPREF0369_01267 NZ_KB290658 GenBank mRNA 7516 11559 . + 1 ID=HMPREF0369_RS13555;Parent=HMPREF0369_RS13555 NZ_KB290658 GenBank CDS 7516 11559 . + 1 ID=HMPREF0369_RS13555;Parent=HMPREF0369_RS13555;Name=HMPREF0369_RS13555;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012475.1%2CHMM:NF018178.1%2CHMM:NF019849.1%2C HMM:NF024144.1,COORDINATES: similar to AA sequence:RefSeq:WP_015530818.1;old_locus_tag=HMPREF0369_01267;product=GH32 C-terminal domain-containing protein;protein_id=WP_009203608.1;transl_table=11;translation=length.1347 NZ_KB290658 GenBank exon 7516 11559 . + 1 Parent=HMPREF0369_RS13555