##gff-version 3
##sequence-region CR626927 1 7749
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis NCTC 9343
# Note Bacteroides fragilis NCTC 9343, complete genome.
# date 06-FEB-2015
CR626927	GenBank	region	1	7749	.	+	1	ID=CR626927;Dbxref=BioProject:PRJNA46,taxon:272559;Name=CR626927;Note=Bacteroides fragilis NCTC 9343%2C complete genome.,Accession number for plasmid pBF9343 in this genome project: CR626928. ;comment1=Accession number for plasmid pBF9343 in this genome project: CR626928. ;culture_collection=ATCC:25285,NCTC:9343;date=06-FEB-2015;mol_type=genomic DNA;organism=Bacteroides fragilis NCTC 9343;type_material=type strain of Bacteroides fragilis
CR626927	GenBank	region	1	7749	.	+	1	ID=GenBank:region:CR626927:1:7749;Note=PS_2/PS_A lipopolysaccharide biosynthesis locus%3B label: PS_A
CR626927	GenBank	gene	1	117	.	+	1	ID=BF9343_1301;Name=wzx3;locus_tag=BF9343_1301
CR626927	GenBank	gene_component_region	1	60	.	+	1	Parent=BF9343_1301;Name=wzx3;Note=14 probable transmembrane helices predicted for BF1369 by TMHMM2.0 at aa 9-31%2C 46-65%2C 85-104%2C 114-136%2C 143-165%2C 169-191%2C 211-233%2C 248-270%2C 294-316%2C 331-351%2C 358-378%2C 383-405%2C 418-440 and 445-464;locus_tag=BF9343_1301
CR626927	GenBank	mRNA	1	117	.	+	1	ID=BF9343_1301.t01;Parent=BF9343_1301
CR626927	GenBank	CDS	1	117	.	+	1	ID=BF9343_1301.p01;Parent=BF9343_1301.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1301,EnsemblGenomes-Tr:CAH07082,GOA:Q5LFL1,InterPro:IPR002797,InterPro:IPR029303,UniProtKB/TrEMBL:Q5LFL1;Name=wzx3;Note=Identical to previously sequenced Bacteroides fragilis putative flippase Wzx SWALL:Q93QW4 (EMBL:AF189282) (482 aa) fasta scores: E(): 3.8e-179%2C 100%25 id in 482 aa%2C and to Streptococcus pneumoniae putative oligosaccharide repeat unit transporter CPS19cJ SWALL:Q9RQG9 (EMBL:AF105116) (481 aa) fasta scores: E(): 3.5e-54%2C 32.7%25 id in 480 aa;codon_start=1;locus_tag=BF9343_1301;old_locus_tag=BF1369;product=putative LPS biosynthesis related flippase;protein_id=CAH07082.1;transl_table=11;translation=length.482
CR626927	GenBank	exon	1	117	.	+	1	Parent=BF9343_1301.t01
CR626927	GenBank	gene	114	1208	.	+	1	ID=BF9343_1302;Name=wcfM;locus_tag=BF9343_1302
CR626927	GenBank	gene_component_region	114	173	.	+	1	Parent=BF9343_1302;Name=wcfM;Note=Signal peptide predicted for BF1370 by SignalP 2.0 HMM (Signal peptide probability 0.844) with cleavage site probability 0.589 between residues 20 and 21;locus_tag=BF9343_1302
CR626927	GenBank	gene_component_region	558	1160	.	+	1	Parent=BF9343_1302;Name=wcfM;Note=Pfam match to entry PF03275 GLF%2C UDP-galactopyranose mutase%2C score 374.6%2C E-value 8.7e-110;locus_tag=BF9343_1302
CR626927	GenBank	mRNA	114	1208	.	+	1	ID=BF9343_1302.t01;Parent=BF9343_1302
CR626927	GenBank	CDS	114	1208	.	+	1	ID=BF9343_1302.p01;Parent=BF9343_1302.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1302,EnsemblGenomes-Tr:CAH07083,GOA:Q5LFL0,InterPro:IPR004379,InterPro:IPR015899,InterPro:IPR016040,UniProtKB/TrEMBL:Q5LFL0;Name=wcfM;Note=Identical to previously sequenced Bacteroides fragilis putative galactopyranose mutase WcfM SWALL:Q93QW3 (EMBL:AF189282) (364 aa) fasta scores: E(): 5.9e-144%2C 100%25 id in 364 aa%2C and to Escherichia coli UDP-galactopyranose mutase Glf or B2036 SWALL:GLF_ECOLI (SWALL:P37747) (367 aa) fasta scores: E(): 2.6e-88%2C 60.22%25 id in 352 aa;codon_start=1;locus_tag=BF9343_1302;old_locus_tag=BF1370;product=putative LPS biosynthesis related UDP-galactopyranose mutase;protein_id=CAH07083.1;transl_table=11;translation=length.364
CR626927	GenBank	exon	114	1208	.	+	1	Parent=BF9343_1302.t01
CR626927	GenBank	gene	1205	2080	.	+	1	ID=BF9343_1303;Name=wcfN;locus_tag=BF9343_1303
CR626927	GenBank	gene_component_region	1214	1720	.	+	1	Parent=BF9343_1303;Name=wcfN;Note=Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferase%2C score 101.2%2C E-value 1.7e-27;locus_tag=BF9343_1303
CR626927	GenBank	mRNA	1205	2080	.	+	1	ID=BF9343_1303.t01;Parent=BF9343_1303
CR626927	GenBank	CDS	1205	2080	.	+	1	ID=BF9343_1303.p01;Parent=BF9343_1303.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1303,EnsemblGenomes-Tr:CAH07084,GOA:Q5LFK9,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q5LFK9;Name=wcfN;Note=Identical to previously sequenced Bacteroides fragilis putative glycosyltransferase WcfN SWALL:Q93QW2 (EMBL:AF189282) (291 aa) fasta scores: E(): 1e-121%2C 100%25 id in 291 aa%2C and to Methanobacterium thermoautotrophicum rhamnosyl transferase MTH348 SWALL:O26448 (EMBL:AE000820) (313 aa) fasta scores: E(): 5.5e-14%2C 29.06%25 id in 320 aa;codon_start=1;locus_tag=BF9343_1303;old_locus_tag=BF1371;product=putative LPS biosynthesis related glycosyltransferase;protein_id=CAH07084.1;transl_table=11;translation=length.291
CR626927	GenBank	exon	1205	2080	.	+	1	Parent=BF9343_1303.t01
CR626927	GenBank	gene	2085	3389	.	+	1	ID=BF9343_1304;Name=wzy3;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2097	2150	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2178	2231	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2256	2324	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2382	2450	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2508	2561	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2571	2624	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2643	2702	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2712	2771	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	2790	2858	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	3060	3128	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	3165	3233	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	gene_component_region	3300	3368	.	+	1	Parent=BF9343_1304;Name=wzy3;Note=12 probable transmembrane helices predicted for BF1372 by TMHMM2.0 at aa 5-22%2C 32-49%2C 58-80%2C 100-122%2C 142-159%2C 163-180%2C 187-206%2C 210-229%2C 236-258%2C 326-348%2C 361-383 and 406-428;locus_tag=BF9343_1304
CR626927	GenBank	mRNA	2085	3389	.	+	1	ID=BF9343_1304.t01;Parent=BF9343_1304
CR626927	GenBank	CDS	2085	3389	.	+	1	ID=BF9343_1304.p01;Parent=BF9343_1304.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1304,EnsemblGenomes-Tr:CAH07085,UniProtKB/TrEMBL:Q5LFK8;Name=wzy3;Note=Identical to previously sequenced Bacteroides fragilis putative polymerase wzy SWALL:Q93QW1 (EMBL:AF189282) (434 aa) fasta scores: E(): 2.1e-170%2C 100%25 id in 434 aa;codon_start=1;locus_tag=BF9343_1304;old_locus_tag=BF1372;product=putative LPS biosynthesis related integral membrane protein;protein_id=CAH07085.1;transl_table=11;translation=length.434
CR626927	GenBank	exon	2085	3389	.	+	1	Parent=BF9343_1304.t01
CR626927	GenBank	gene	3400	4443	.	+	1	ID=BF9343_1305;Name=wcfO;locus_tag=BF9343_1305
CR626927	GenBank	mRNA	3400	4443	.	+	1	ID=BF9343_1305.t01;Parent=BF9343_1305
CR626927	GenBank	CDS	3400	4443	.	+	1	ID=BF9343_1305.p01;Parent=BF9343_1305.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1305,EnsemblGenomes-Tr:CAH07086,InterPro:IPR007345,UniProtKB/TrEMBL:Q5LFK7;Name=wcfO;Note=Bacteroides fragilis putative glycosyltransferase WcfO SWALL:Q93QW0 (EMBL:AF189282) (347 aa) fasta scores: E(): 6.7e-142%2C 100%25 id in 347 aa;codon_start=1;locus_tag=BF9343_1305;old_locus_tag=BF1373;product=unknown;protein_id=CAH07086.1;transl_table=11;translation=length.347
CR626927	GenBank	exon	3400	4443	.	+	1	Parent=BF9343_1305.t01
CR626927	GenBank	gene	4440	5576	.	+	1	ID=BF9343_1306;Name=wcfP;locus_tag=BF9343_1306
CR626927	GenBank	gene_component_region	5004	5510	.	+	1	Parent=BF9343_1306;Name=wcfP;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 94.9%2C E-value 1.3e-25;locus_tag=BF9343_1306
CR626927	GenBank	mRNA	4440	5576	.	+	1	ID=BF9343_1306.t01;Parent=BF9343_1306
CR626927	GenBank	CDS	4440	5576	.	+	1	ID=BF9343_1306.p01;Parent=BF9343_1306.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1306,EnsemblGenomes-Tr:CAH07087,GOA:Q5LFK6,InterPro:IPR001296,UniProtKB/TrEMBL:Q5LFK6;Name=wcfP;Note=Similar to Bacteroides fragilis putative glycosyltransferase WcfP SWALL:Q93QV9 (EMBL:AF189282) (378 aa) fasta scores: E(): 8.5e-155%2C 100%25 id in 378 aa%2C and to Streptococcus pneumoniae capsular polysaccharide WciL or sp0353 SWALL:Q9AHC8 (EMBL:AF316639) (372 aa) fasta scores: E(): 5.1e-40%2C 35.86%25 id in 368 aa%2C and to Streptococcus thermophilus Eps3J SWALL:Q8GMA0 (EMBL:AY057915) (366 aa) fasta scores: E(): 4.9e-33%2C 31.81%25 id in 374 aa;codon_start=1;locus_tag=BF9343_1306;old_locus_tag=BF1374;product=putative glycosyltransferase;protein_id=CAH07087.1;transl_table=11;translation=length.378
CR626927	GenBank	exon	4440	5576	.	+	1	Parent=BF9343_1306.t01
CR626927	GenBank	gene	5573	6379	.	+	1	ID=BF9343_1307;Name=wcfQ;locus_tag=BF9343_1307
CR626927	GenBank	gene_component_region	5582	6085	.	+	1	Parent=BF9343_1307;Name=wcfQ;Note=Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferase%2C score 70.3%2C E-value 3.4e-18;locus_tag=BF9343_1307
CR626927	GenBank	mRNA	5573	6379	.	+	1	ID=BF9343_1307.t01;Parent=BF9343_1307
CR626927	GenBank	CDS	5573	6379	.	+	1	ID=BF9343_1307.p01;Parent=BF9343_1307.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1307,EnsemblGenomes-Tr:CAH07088,GOA:Q5LFK5,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q5LFK5;Name=wcfQ;Note=Similar to previously sequenced Bacteroides fragilis putative glycosyltransferase WcfQ SWALL:Q93QV8 (EMBL:AF189282) (268 aa) fasta scores: E(): 7.5e-112%2C 100%25 id in 268 aa%2C and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1709 SWALL:AAO76816 (EMBL:AE016932) (273 aa) fasta scores: E(): 6.4e-25%2C 32.83%25 id in 268 aa%2C and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1645 SWALL:AAO76752 (EMBL:AE016932) (269 aa) fasta scores: E(): 1.6e-24%2C 31.83%25 id in 267 aa%2C and to Erwinia amylovora amylovoran biosynthesis glycosyl transferase AmsE SWALL:AMSE_ERWAM (SWALL:Q46635) (266 aa) fasta scores: E(): 2e-23%2C 33.33%25 id in 270 aa;codon_start=1;locus_tag=BF9343_1307;old_locus_tag=BF1375;product=putative glycosyltransferase;protein_id=CAH07088.1;transl_table=11;translation=length.268
CR626927	GenBank	exon	5573	6379	.	+	1	Parent=BF9343_1307.t01
CR626927	GenBank	gene	6408	7631	.	+	1	ID=BF9343_1308;Name=wcfR;locus_tag=BF9343_1308
CR626927	GenBank	gene_component_region	6429	7595	.	+	1	Parent=BF9343_1308;Name=wcfR;Note=Pfam match to entry PF01041 DegT_DnrJ_EryC1%2C DegT/DnrJ/EryC1/StrS aminotransferase family%2C score 291.7%2C E-value 7.9e-85;locus_tag=BF9343_1308
CR626927	GenBank	mRNA	6408	7631	.	+	1	ID=BF9343_1308.t01;Parent=BF9343_1308
CR626927	GenBank	CDS	6408	7631	.	+	1	ID=BF9343_1308.p01;Parent=BF9343_1308.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1308,EnsemblGenomes-Tr:CAH07089,GOA:Q5LFK4,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q5LFK4;Name=wcfR;Note=Similar to previously sequenced Bacteroides fragilis putative amino sugar synthetase WcfR SWALL:Q93QV7 (EMBL:AF189282) (407 aa) fasta scores: E(): 1.5e-157%2C 100%25 id in 407 aa%2C and to Streptococcus suis Cps7G cps7G SWALL:Q9RFX1 (EMBL:AF164515) (404 aa) fasta scores: E(): 1.6e-67%2C 44.92%25 id in 394 aa%2C and to Streptococcus pneumoniae capsular polysaccharide biosynthesis protein%2C putative sp1837 SWALL:Q97P07 (EMBL:AE007475) (408 aa) fasta scores: E(): 1.9e-62%2C 43.48%25 id in 407 aa;codon_start=1;locus_tag=BF9343_1308;old_locus_tag=BF1376;product=putative DegT/DnrJ/EryC1/StrS family amino sugar synthetase;protein_id=CAH07089.1;transl_table=11;translation=length.407
CR626927	GenBank	exon	6408	7631	.	+	1	Parent=BF9343_1308.t01
CR626927	GenBank	gene	7663	7749	.	+	1	ID=BF9343_1309;Name=wcfS;locus_tag=BF9343_1309
CR626927	GenBank	gene_component_region	7669	7749	.	+	1	Parent=BF9343_1309;Name=wcfS;Note=Pfam match to entry PF02397 Bact_transf%2C Bacterial sugar transferase%2C score 95.2%2C E-value 1.1e-25;locus_tag=BF9343_1309
CR626927	GenBank	gene_component_region	7681	7749	.	+	1	Parent=BF9343_1309;Name=wcfS;Note=1 probable transmembrane helix predicted for BF1377 by TMHMM2.0 at aa 7-29;locus_tag=BF9343_1309
CR626927	GenBank	mRNA	7663	7749	.	+	1	ID=BF9343_1309.t01;Parent=BF9343_1309
CR626927	GenBank	CDS	7663	7749	.	+	1	ID=BF9343_1309.p01;Parent=BF9343_1309.t01;Dbxref=EnsemblGenomes-Gn:BF9343_1309,EnsemblGenomes-Tr:CAH07090,GOA:Q5LFK3,InterPro:IPR003362,UniProtKB/TrEMBL:Q5LFK3;Name=wcfS;Note=Similar to previously sequenced Bacteroides fragilis putative undecaprenyl-phosphate galactose phosphotransferase WcfS SWALL:Q93QV6 (EMBL:AF189282) (198 aa) fasta scores: E(): 4.8e-76%2C 99.48%25 id in 195 aa%2C and to Bacteroides thetaiotaomicron glycosyltransferase BT0611 SWALL:AAO75718 (EMBL:AE016928) (197 aa) fasta scores: E(): 5.7e-39%2C 57.21%25 id in 194 aa%2C and to Shigella sonnei ORF8S wbgy or ORF8G SWALL:Q9S0U8 (EMBL:AB028134) (196 aa) fasta scores: E(): 1.6e-38%2C 55.89%25 id in 195 aa;codon_start=1;locus_tag=BF9343_1309;old_locus_tag=BF1377;product=undecaprenyl-phosphate galactose phosphotransferase;protein_id=CAH07090.1;transl_table=11;translation=length.195
CR626927	GenBank	exon	7663	7749	.	+	1	Parent=BF9343_1309.t01