##gff-version 3
##sequence-region NC_016776 1 21424
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis 638R
# Note Bacteroides fragilis 638R, complete sequence.
# date 17-FEB-2020
NC_016776	GenBank	region	1	21424	.	+	1	ID=NC_016776;Dbxref=BioProject:PRJNA224116,taxon:862962;Name=NC_016776;Note=Bacteroides fragilis 638R%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,439 CDSs (total) :: 4,346 Genes (coding) :: 4,241 CDSs (with protein) :: 4,241 Genes (RNA) :: 93 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C439 CDSs (total) :: 4%2C346 Genes (coding) :: 4%2C241 CDSs (with protein) :: 4%2C241 Genes (RNA) :: 93 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-FEB-2020;mol_type=genomic DNA;organism=Bacteroides fragilis 638R;strain=638R
NC_016776	GenBank	gene	1	894	.	+	1	ID=BF638R_RS08735;Name=rfbA;locus_tag=BF638R_RS08735;old_locus_tag=BF638R_1864
NC_016776	GenBank	mRNA	1	894	.	+	1	ID=BF638R_RS08735.t01;Parent=BF638R_RS08735
NC_016776	GenBank	CDS	1	894	.	+	1	ID=BF638R_RS08735.p01;Parent=BF638R_RS08735.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002561545.1;locus_tag=BF638R_RS08735;old_locus_tag=BF638R_1864;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_014298681.1;transl_table=11;translation=length.297
NC_016776	GenBank	exon	1	894	.	+	1	Parent=BF638R_RS08735.t01
NC_016776	GenBank	gene	1088	2371	.	+	1	ID=BF638R_RS08740;Name=BF638R_RS08740;old_locus_tag=BF638R_1865
NC_016776	GenBank	mRNA	1088	2371	.	+	1	ID=BF638R_RS08740.t01;Parent=BF638R_RS08740
NC_016776	GenBank	CDS	1088	2371	.	+	1	ID=BF638R_RS08740.p01;Parent=BF638R_RS08740.t01;Name=BF638R_RS08740;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010992741.1;old_locus_tag=BF638R_1865;product=hypothetical protein;protein_id=WP_032576176.1;transl_table=11;translation=length.427
NC_016776	GenBank	exon	1088	2371	.	+	1	Parent=BF638R_RS08740.t01
NC_016776	GenBank	gene	2364	3083	.	+	1	ID=BF638R_RS08745;Name=BF638R_RS08745;old_locus_tag=BF638R_1866
NC_016776	GenBank	mRNA	2364	3083	.	+	1	ID=BF638R_RS08745.t01;Parent=BF638R_RS08745
NC_016776	GenBank	CDS	2364	3083	.	+	1	ID=BF638R_RS08745.p01;Parent=BF638R_RS08745.t01;Name=BF638R_RS08745;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298683.1;old_locus_tag=BF638R_1866;product=phosphocholine cytidylyltransferase family protein;protein_id=WP_014298683.1;transl_table=11;translation=length.239
NC_016776	GenBank	exon	2364	3083	.	+	1	Parent=BF638R_RS08745.t01
NC_016776	GenBank	gene	3103	4404	.	+	1	ID=BF638R_RS08750;Name=aepX;locus_tag=BF638R_RS08750;old_locus_tag=BF638R_1867
NC_016776	GenBank	mRNA	3103	4404	.	+	1	ID=BF638R_RS08750.t01;Parent=BF638R_RS08750
NC_016776	GenBank	CDS	3103	4404	.	+	1	ID=BF638R_RS08750.p01;Parent=BF638R_RS08750.t01;eC_number=5.4.2.9;Name=aepX;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817134.1;locus_tag=BF638R_RS08750;old_locus_tag=BF638R_1867;product=phosphoenolpyruvate mutase;protein_id=WP_005817134.1;transl_table=11;translation=length.433
NC_016776	GenBank	exon	3103	4404	.	+	1	Parent=BF638R_RS08750.t01
NC_016776	GenBank	gene	4416	5552	.	+	1	ID=BF638R_RS08755;Name=aepY;locus_tag=BF638R_RS08755;old_locus_tag=BF638R_1868
NC_016776	GenBank	mRNA	4416	5552	.	+	1	ID=BF638R_RS08755.t01;Parent=BF638R_RS08755
NC_016776	GenBank	CDS	4416	5552	.	+	1	ID=BF638R_RS08755.p01;Parent=BF638R_RS08755.t01;eC_number=4.1.1.82;Name=aepY;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817136.1;locus_tag=BF638R_RS08755;old_locus_tag=BF638R_1868;product=phosphonopyruvate decarboxylase;protein_id=WP_014298685.1;transl_table=11;translation=length.378
NC_016776	GenBank	exon	4416	5552	.	+	1	Parent=BF638R_RS08755.t01
NC_016776	GenBank	gene	5549	6673	.	+	1	ID=BF638R_RS08760;Name=BF638R_RS08760;old_locus_tag=BF638R_1869
NC_016776	GenBank	mRNA	5549	6673	.	+	1	ID=BF638R_RS08760.t01;Parent=BF638R_RS08760
NC_016776	GenBank	CDS	5549	6673	.	+	1	ID=BF638R_RS08760.p01;Parent=BF638R_RS08760.t01;eC_number=2.6.1.37;Name=BF638R_RS08760;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008767816.1;old_locus_tag=BF638R_1869;product=2-aminoethylphosphonate--pyruvate transaminase;protein_id=WP_014298686.1;transl_table=11;translation=length.374
NC_016776	GenBank	exon	5549	6673	.	+	1	Parent=BF638R_RS08760.t01
NC_016776	GenBank	gene	6676	7785	.	+	1	ID=BF638R_RS08765;Name=BF638R_RS08765;old_locus_tag=BF638R_1870
NC_016776	GenBank	mRNA	6676	7785	.	+	1	ID=BF638R_RS08765.t01;Parent=BF638R_RS08765
NC_016776	GenBank	CDS	6676	7785	.	+	1	ID=BF638R_RS08765.p01;Parent=BF638R_RS08765.t01;Name=BF638R_RS08765;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009125530.1;old_locus_tag=BF638R_1870;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_014298687.1;transl_table=11;translation=length.369
NC_016776	GenBank	exon	6676	7785	.	+	1	Parent=BF638R_RS08765.t01
NC_016776	GenBank	gene	7782	8330	.	+	1	ID=BF638R_RS08770;Name=BF638R_RS08770;old_locus_tag=BF638R_1871
NC_016776	GenBank	mRNA	7782	8330	.	+	1	ID=BF638R_RS08770.t01;Parent=BF638R_RS08770
NC_016776	GenBank	CDS	7782	8330	.	+	1	ID=BF638R_RS08770.p01;Parent=BF638R_RS08770.t01;Name=BF638R_RS08770;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016082012.1;old_locus_tag=BF638R_1871;product=acyltransferase;protein_id=WP_014298688.1;transl_table=11;translation=length.182
NC_016776	GenBank	exon	7782	8330	.	+	1	Parent=BF638R_RS08770.t01
NC_016776	GenBank	gene	8317	9261	.	+	1	ID=BF638R_RS08775;Name=BF638R_RS08775
NC_016776	GenBank	mRNA	8317	9261	.	+	1	ID=BF638R_RS08775.t01;Parent=BF638R_RS08775
NC_016776	GenBank	CDS	8317	9261	.	+	1	ID=BF638R_RS08775.p01;Parent=BF638R_RS08775.t01;Name=BF638R_RS08775;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012745.1;product=glycosyltransferase;protein_id=WP_014298689.1;transl_table=11;translation=length.314
NC_016776	GenBank	exon	8317	9261	.	+	1	Parent=BF638R_RS08775.t01
NC_016776	GenBank	gene	9258	10424	.	+	1	ID=BF638R_RS08780;Name=BF638R_RS08780;old_locus_tag=BF638R_1873
NC_016776	GenBank	mRNA	9258	10424	.	+	1	ID=BF638R_RS08780.t01;Parent=BF638R_RS08780
NC_016776	GenBank	CDS	9258	10424	.	+	1	ID=BF638R_RS08780.p01;Parent=BF638R_RS08780.t01;Name=BF638R_RS08780;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BF638R_1873;product=hypothetical protein;protein_id=WP_014298690.1;transl_table=11;translation=length.388
NC_016776	GenBank	exon	9258	10424	.	+	1	Parent=BF638R_RS08780.t01
NC_016776	GenBank	gene	10421	11677	.	+	1	ID=BF638R_RS08785;Name=BF638R_RS08785;old_locus_tag=BF638R_1874
NC_016776	GenBank	mRNA	10421	11677	.	+	1	ID=BF638R_RS08785.t01;Parent=BF638R_RS08785
NC_016776	GenBank	CDS	10421	11677	.	+	1	ID=BF638R_RS08785.p01;Parent=BF638R_RS08785.t01;Name=BF638R_RS08785;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014051.1;old_locus_tag=BF638R_1874;product=oligosaccharide flippase family protein;protein_id=WP_014298691.1;transl_table=11;translation=length.418
NC_016776	GenBank	exon	10421	11677	.	+	1	Parent=BF638R_RS08785.t01
NC_016776	GenBank	gene	11664	12536	.	+	1	ID=BF638R_RS08790;Name=BF638R_RS08790;old_locus_tag=BF638R_1875
NC_016776	GenBank	mRNA	11664	12536	.	+	1	ID=BF638R_RS08790.t01;Parent=BF638R_RS08790
NC_016776	GenBank	CDS	11664	12536	.	+	1	ID=BF638R_RS08790.p01;Parent=BF638R_RS08790.t01;Name=BF638R_RS08790;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF013681.1;old_locus_tag=BF638R_1875;product=alpha-1%2C2-fucosyltransferase;protein_id=WP_014298692.1;transl_table=11;translation=length.290
NC_016776	GenBank	exon	11664	12536	.	+	1	Parent=BF638R_RS08790.t01
NC_016776	GenBank	gene	12857	14194	.	+	1	ID=BF638R_RS08795;Name=BF638R_RS08795;old_locus_tag=BF638R_1876
NC_016776	GenBank	mRNA	12857	14194	.	+	1	ID=BF638R_RS08795.t01;Parent=BF638R_RS08795
NC_016776	GenBank	CDS	12857	14194	.	+	1	ID=BF638R_RS08795.p01;Parent=BF638R_RS08795.t01;Name=BF638R_RS08795;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008659614.1;old_locus_tag=BF638R_1876;product=hypothetical protein;protein_id=WP_014298693.1;transl_table=11;translation=length.445
NC_016776	GenBank	exon	12857	14194	.	+	1	Parent=BF638R_RS08795.t01
NC_016776	GenBank	gene	14194	15204	.	+	1	ID=BF638R_RS08800;Name=BF638R_RS08800;old_locus_tag=BF638R_1877
NC_016776	GenBank	mRNA	14194	15204	.	+	1	ID=BF638R_RS08800.t01;Parent=BF638R_RS08800
NC_016776	GenBank	CDS	14194	15204	.	+	1	ID=BF638R_RS08800.p01;Parent=BF638R_RS08800.t01;Name=BF638R_RS08800;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008659616.1;old_locus_tag=BF638R_1877;product=glycosyltransferase;protein_id=WP_014298694.1;transl_table=11;translation=length.336
NC_016776	GenBank	exon	14194	15204	.	+	1	Parent=BF638R_RS08800.t01
NC_016776	GenBank	gene	15208	16230	.	+	1	ID=BF638R_RS08805;Name=BF638R_RS08805;old_locus_tag=BF638R_1878
NC_016776	GenBank	mRNA	15208	16230	.	+	1	ID=BF638R_RS08805.t01;Parent=BF638R_RS08805
NC_016776	GenBank	CDS	15208	16230	.	+	1	ID=BF638R_RS08805.p01;Parent=BF638R_RS08805.t01;Name=BF638R_RS08805;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005778130.1;old_locus_tag=BF638R_1878;product=polysaccharide biosynthesis protein;protein_id=WP_014298695.1;transl_table=11;translation=length.340
NC_016776	GenBank	exon	15208	16230	.	+	1	Parent=BF638R_RS08805.t01
NC_016776	GenBank	gene	16218	17348	.	+	1	ID=BF638R_RS08810;Name=wecB;locus_tag=BF638R_RS08810;old_locus_tag=BF638R_1879
NC_016776	GenBank	mRNA	16218	17348	.	+	1	ID=BF638R_RS08810.t01;Parent=BF638R_RS08810
NC_016776	GenBank	CDS	16218	17348	.	+	1	ID=BF638R_RS08810.p01;Parent=BF638R_RS08810.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005786857.1;locus_tag=BF638R_RS08810;old_locus_tag=BF638R_1879;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_041161361.1;transl_table=11;translation=length.376
NC_016776	GenBank	exon	16218	17348	.	+	1	Parent=BF638R_RS08810.t01
NC_016776	GenBank	gene	17369	18232	.	+	1	ID=BF638R_RS08815;Name=BF638R_RS08815;old_locus_tag=BF638R_1880
NC_016776	GenBank	mRNA	17369	18232	.	+	1	ID=BF638R_RS08815.t01;Parent=BF638R_RS08815
NC_016776	GenBank	CDS	17369	18232	.	+	1	ID=BF638R_RS08815.p01;Parent=BF638R_RS08815.t01;Name=BF638R_RS08815;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298697.1;old_locus_tag=BF638R_1880;product=SDR family oxidoreductase;protein_id=WP_014298697.1;transl_table=11;translation=length.287
NC_016776	GenBank	exon	17369	18232	.	+	1	Parent=BF638R_RS08815.t01
NC_016776	GenBank	gene	18229	19440	.	+	1	ID=BF638R_RS08820;Name=BF638R_RS08820;old_locus_tag=BF638R_1881
NC_016776	GenBank	mRNA	18229	19440	.	+	1	ID=BF638R_RS08820.t01;Parent=BF638R_RS08820
NC_016776	GenBank	CDS	18229	19440	.	+	1	ID=BF638R_RS08820.p01;Parent=BF638R_RS08820.t01;Name=BF638R_RS08820;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005776619.1;old_locus_tag=BF638R_1881;product=glycosyltransferase family 4 protein;protein_id=WP_005817165.1;transl_table=11;translation=length.403
NC_016776	GenBank	exon	18229	19440	.	+	1	Parent=BF638R_RS08820.t01
NC_016776	GenBank	gene	19463	20470	.	+	1	ID=BF638R_RS08825;Name=BF638R_RS08825;old_locus_tag=BF638R_1882
NC_016776	GenBank	mRNA	19463	20470	.	+	1	ID=BF638R_RS08825.t01;Parent=BF638R_RS08825
NC_016776	GenBank	CDS	19463	20470	.	+	1	ID=BF638R_RS08825.p01;Parent=BF638R_RS08825.t01;Name=BF638R_RS08825;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005819698.1;old_locus_tag=BF638R_1882;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_014298698.1;transl_table=11;translation=length.335
NC_016776	GenBank	exon	19463	20470	.	+	1	Parent=BF638R_RS08825.t01
NC_016776	GenBank	gene	20474	21424	.	+	1	ID=BF638R_RS08830;Name=BF638R_RS08830;old_locus_tag=BF638R_1883
NC_016776	GenBank	mRNA	20474	21424	.	+	1	ID=BF638R_RS08830.t01;Parent=BF638R_RS08830
NC_016776	GenBank	CDS	20474	21424	.	+	1	ID=BF638R_RS08830.p01;Parent=BF638R_RS08830.t01;Name=BF638R_RS08830;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007480532.1;old_locus_tag=BF638R_1883;product=glycosyltransferase family 4 protein;protein_id=WP_014298699.1;transl_table=11;translation=length.316
NC_016776	GenBank	exon	20474	21424	.	+	1	Parent=BF638R_RS08830.t01