##gff-version 3
##sequence-region NC_009441 1 18354
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	18354	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	657	.	-	1	ID=FJOH_RS21960;Dbxref=GeneID:31767168;Name=FJOH_RS21960;old_locus_tag=Fjoh_4246
NC_009441	GenBank	mRNA	1	657	.	-	1	ID=FJOH_RS21960.t01;Parent=FJOH_RS21960
NC_009441	GenBank	CDS	1	657	.	-	1	ID=FJOH_RS21960.p01;Parent=FJOH_RS21960.t01;Dbxref=GeneID:31767168;Name=FJOH_RS21960;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008467645.1;old_locus_tag=Fjoh_4246;product=rhamnogalacturonan acetylesterase;protein_id=WP_012026220.1;transl_table=11;translation=length.218
NC_009441	GenBank	exon	1	657	.	-	1	Parent=FJOH_RS21960.t01
NC_009441	GenBank	gene	758	2104	.	-	1	ID=FJOH_RS21965;Dbxref=GeneID:31767169;Name=FJOH_RS21965;old_locus_tag=Fjoh_4247
NC_009441	GenBank	mRNA	758	2104	.	-	1	ID=FJOH_RS21965.t01;Parent=FJOH_RS21965
NC_009441	GenBank	CDS	758	2104	.	-	1	ID=FJOH_RS21965.p01;Parent=FJOH_RS21965.t01;Dbxref=GeneID:31767169;Name=FJOH_RS21965;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008467647.1;old_locus_tag=Fjoh_4247;product=glycoside hydrolase family 28 protein;protein_id=WP_012026221.1;transl_table=11;translation=length.448
NC_009441	GenBank	exon	758	2104	.	-	1	Parent=FJOH_RS21965.t01
NC_009441	GenBank	gene	2230	4230	.	-	1	ID=FJOH_RS21970;Dbxref=GeneID:31767170;Name=pelA;locus_tag=FJOH_RS21970;old_locus_tag=Fjoh_4248
NC_009441	GenBank	mRNA	2230	4230	.	-	1	ID=FJOH_RS21970.t01;Parent=FJOH_RS21970
NC_009441	GenBank	CDS	2230	4230	.	-	1	ID=FJOH_RS21970.p01;Parent=FJOH_RS21970.t01;Dbxref=GeneID:31767170;eC_number=4.2.2.2;Name=pelA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017495623.1;locus_tag=FJOH_RS21970;old_locus_tag=Fjoh_4248;product=pectate lyase;protein_id=WP_012026222.1;transl_table=11;translation=length.666
NC_009441	GenBank	exon	2230	4230	.	-	1	Parent=FJOH_RS21970.t01
NC_009441	GenBank	gene	4240	5838	.	-	1	ID=FJOH_RS21975;Dbxref=GeneID:31767171;Name=FJOH_RS21975;old_locus_tag=Fjoh_4249
NC_009441	GenBank	mRNA	4240	5838	.	-	1	ID=FJOH_RS21975.t01;Parent=FJOH_RS21975
NC_009441	GenBank	CDS	4240	5838	.	-	1	ID=FJOH_RS21975.p01;Parent=FJOH_RS21975.t01;Dbxref=GeneID:31767171;Name=FJOH_RS21975;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008467651.1;old_locus_tag=Fjoh_4249;product=glycosyl hydrolase 43 family protein;protein_id=WP_012026223.1;transl_table=11;translation=length.532
NC_009441	GenBank	exon	4240	5838	.	-	1	Parent=FJOH_RS21975.t01
NC_009441	GenBank	gene	6009	7229	.	-	1	ID=FJOH_RS21980;Dbxref=GeneID:31767172;Name=FJOH_RS21980;old_locus_tag=Fjoh_4250
NC_009441	GenBank	mRNA	6009	7229	.	-	1	ID=FJOH_RS21980.t01;Parent=FJOH_RS21980
NC_009441	GenBank	CDS	6009	7229	.	-	1	ID=FJOH_RS21980.p01;Parent=FJOH_RS21980.t01;Dbxref=GeneID:31767172;Name=FJOH_RS21980;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008467653.1;old_locus_tag=Fjoh_4250;product=glycoside hydrolase family 88 protein;protein_id=WP_044048002.1;transl_table=11;translation=length.406
NC_009441	GenBank	exon	6009	7229	.	-	1	Parent=FJOH_RS21980.t01
NC_009441	GenBank	gene	7252	8457	.	-	1	ID=FJOH_RS21985;Dbxref=GeneID:31767173;Name=FJOH_RS21985;old_locus_tag=Fjoh_4251
NC_009441	GenBank	mRNA	7252	8457	.	-	1	ID=FJOH_RS21985.t01;Parent=FJOH_RS21985
NC_009441	GenBank	CDS	7252	8457	.	-	1	ID=FJOH_RS21985.p01;Parent=FJOH_RS21985.t01;Dbxref=GeneID:31767173;Name=FJOH_RS21985;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012026226.1;old_locus_tag=Fjoh_4251;product=glycoside hydrolase family 88 protein;protein_id=WP_012026225.1;transl_table=11;translation=length.401
NC_009441	GenBank	exon	7252	8457	.	-	1	Parent=FJOH_RS21985.t01
NC_009441	GenBank	gene	8470	9669	.	-	1	ID=FJOH_RS21990;Dbxref=GeneID:31767174;Name=FJOH_RS21990;old_locus_tag=Fjoh_4252
NC_009441	GenBank	mRNA	8470	9669	.	-	1	ID=FJOH_RS21990.t01;Parent=FJOH_RS21990
NC_009441	GenBank	CDS	8470	9669	.	-	1	ID=FJOH_RS21990.p01;Parent=FJOH_RS21990.t01;Dbxref=GeneID:31767174;Name=FJOH_RS21990;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012026225.1;old_locus_tag=Fjoh_4252;product=glycoside hydrolase family 88 protein;protein_id=WP_012026226.1;transl_table=11;translation=length.399
NC_009441	GenBank	exon	8470	9669	.	-	1	Parent=FJOH_RS21990.t01
NC_009441	GenBank	gene	9711	10667	.	-	1	ID=FJOH_RS21995;Dbxref=GeneID:31767175;Name=FJOH_RS21995;old_locus_tag=Fjoh_4253
NC_009441	GenBank	mRNA	9711	10667	.	-	1	ID=FJOH_RS21995.t01;Parent=FJOH_RS21995
NC_009441	GenBank	CDS	9711	10667	.	-	1	ID=FJOH_RS21995.p01;Parent=FJOH_RS21995.t01;Dbxref=GeneID:31767175;Name=FJOH_RS21995;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017495619.1;old_locus_tag=Fjoh_4253;product=alpha/beta hydrolase;protein_id=WP_012026227.1;transl_table=11;translation=length.318
NC_009441	GenBank	exon	9711	10667	.	-	1	Parent=FJOH_RS21995.t01
NC_009441	GenBank	gene	10772	12445	.	-	1	ID=FJOH_RS22000;Dbxref=GeneID:31767176;Name=FJOH_RS22000;old_locus_tag=Fjoh_4254
NC_009441	GenBank	mRNA	10772	12445	.	-	1	ID=FJOH_RS22000.t01;Parent=FJOH_RS22000
NC_009441	GenBank	CDS	10772	12445	.	-	1	ID=FJOH_RS22000.p01;Parent=FJOH_RS22000.t01;Dbxref=GeneID:31767176;Name=FJOH_RS22000;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008467658.1;old_locus_tag=Fjoh_4254;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_012026228.1;transl_table=11;translation=length.557
NC_009441	GenBank	exon	10772	12445	.	-	1	Parent=FJOH_RS22000.t01
NC_009441	GenBank	gene	12458	15562	.	-	1	ID=FJOH_RS22005;Dbxref=GeneID:31767177;Name=FJOH_RS22005;old_locus_tag=Fjoh_4255
NC_009441	GenBank	mRNA	12458	15562	.	-	1	ID=FJOH_RS22005.t01;Parent=FJOH_RS22005
NC_009441	GenBank	CDS	12458	15562	.	-	1	ID=FJOH_RS22005.p01;Parent=FJOH_RS22005.t01;Dbxref=GeneID:31767177;Name=FJOH_RS22005;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008467661.1;old_locus_tag=Fjoh_4255;product=TonB-dependent receptor;protein_id=WP_012026229.1;transl_table=11;translation=length.1034
NC_009441	GenBank	exon	12458	15562	.	-	1	Parent=FJOH_RS22005.t01
NC_009441	GenBank	gene	15608	17035	.	-	1	ID=FJOH_RS22010;Dbxref=GeneID:31767178;Name=FJOH_RS22010;old_locus_tag=Fjoh_4256
NC_009441	GenBank	mRNA	15608	17035	.	-	1	ID=FJOH_RS22010.t01;Parent=FJOH_RS22010
NC_009441	GenBank	CDS	15608	17035	.	-	1	ID=FJOH_RS22010.p01;Parent=FJOH_RS22010.t01;Dbxref=GeneID:31767178;Name=FJOH_RS22010;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017495616.1;old_locus_tag=Fjoh_4256;product=glycoside hydrolase family 28 protein;protein_id=WP_012026230.1;transl_table=11;translation=length.475
NC_009441	GenBank	exon	15608	17035	.	-	1	Parent=FJOH_RS22010.t01
NC_009441	GenBank	gene	17326	18354	.	+	1	ID=FJOH_RS22015;Dbxref=GeneID:31767179;Name=FJOH_RS22015;old_locus_tag=Fjoh_4257
NC_009441	GenBank	mRNA	17326	18354	.	+	1	ID=FJOH_RS22015.t01;Parent=FJOH_RS22015
NC_009441	GenBank	CDS	17326	18354	.	+	1	ID=FJOH_RS22015.p01;Parent=FJOH_RS22015.t01;Dbxref=GeneID:31767179;Name=FJOH_RS22015;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008467665.1;old_locus_tag=Fjoh_4257;product=LacI family transcriptional regulator;protein_id=WP_012026231.1;transl_table=11;translation=length.342
NC_009441	GenBank	exon	17326	18354	.	+	1	Parent=FJOH_RS22015.t01