##gff-version 3
##sequence-region NC_011898 1 23478
# conversion-by bp_genbank2gff3.pl
# organism Ruminiclostridium cellulolyticum H10
# Note Ruminiclostridium cellulolyticum H10, complete sequence.
# date 04-FEB-2020
NC_011898	GenBank	region	1	23478	.	+	1	ID=NC_011898;Dbxref=BioProject:PRJNA224116,taxon:394503;Name=NC_011898;Note=Ruminiclostridium cellulolyticum H10%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 3,537 CDSs (total) :: 3,447 Genes (coding) :: 3,334 CDSs (with protein) :: 3,334 Genes (RNA) :: 90 rRNAs :: 8,8,8 (5S,16S,23S) complete rRNAs :: 8,8,8 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 3%2C537 CDSs (total) :: 3%2C447 Genes (coding) :: 3%2C334 CDSs (with protein) :: 3%2C334 Genes (RNA) :: 90 rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) complete rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;culture_collection=ATCC:35319;date=04-FEB-2020;mol_type=genomic DNA;organism=Ruminiclostridium cellulolyticum H10;strain=H10;type_material=type strain of Ruminiclostridium cellulolyticum
NC_011898	GenBank	gene	1	1608	.	+	1	ID=CCEL_RS06160;Name=CCEL_RS06160;old_locus_tag=Ccel_1229
NC_011898	GenBank	mRNA	1	1608	.	+	1	ID=CCEL_RS06160.t01;Parent=CCEL_RS06160
NC_011898	GenBank	CDS	1	1608	.	+	1	ID=CCEL_RS06160.p01;Parent=CCEL_RS06160.t01;Name=CCEL_RS06160;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004617602.1;old_locus_tag=Ccel_1229;product=carbohydrate-binding protein;protein_id=WP_015924734.1;transl_table=11;translation=length.535
NC_011898	GenBank	exon	1	1608	.	+	1	Parent=CCEL_RS06160.t01
NC_011898	GenBank	gene	1714	3339	.	+	1	ID=CCEL_RS06165;Name=CCEL_RS06165;old_locus_tag=Ccel_1230
NC_011898	GenBank	mRNA	1714	3339	.	+	1	ID=CCEL_RS06165.t01;Parent=CCEL_RS06165
NC_011898	GenBank	CDS	1714	3339	.	+	1	ID=CCEL_RS06165.p01;Parent=CCEL_RS06165.t01;Name=CCEL_RS06165;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020815939.1;old_locus_tag=Ccel_1230;product=carbohydrate-binding protein;protein_id=WP_015924735.1;transl_table=11;translation=length.541
NC_011898	GenBank	exon	1714	3339	.	+	1	Parent=CCEL_RS06165.t01
NC_011898	GenBank	gene	3407	4981	.	+	1	ID=CCEL_RS06170;Name=CCEL_RS06170;old_locus_tag=Ccel_1231
NC_011898	GenBank	mRNA	3407	4981	.	+	1	ID=CCEL_RS06170.t01;Parent=CCEL_RS06170
NC_011898	GenBank	CDS	3407	4981	.	+	1	ID=CCEL_RS06170.p01;Parent=CCEL_RS06170.t01;Name=CCEL_RS06170;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312551.1;old_locus_tag=Ccel_1231;product=family 43 glycosylhydrolase;protein_id=WP_015924736.1;transl_table=11;translation=length.524
NC_011898	GenBank	exon	3407	4981	.	+	1	Parent=CCEL_RS06170.t01
NC_011898	GenBank	gene	5004	6476	.	+	1	ID=CCEL_RS06175;Name=CCEL_RS06175;old_locus_tag=Ccel_1232
NC_011898	GenBank	mRNA	5004	6476	.	+	1	ID=CCEL_RS06175.t01;Parent=CCEL_RS06175
NC_011898	GenBank	CDS	5004	6476	.	+	1	ID=CCEL_RS06175.p01;Parent=CCEL_RS06175.t01;Name=CCEL_RS06175;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312552.1;old_locus_tag=Ccel_1232;product=carbohydrate-binding protein;protein_id=WP_015924737.1;transl_table=11;translation=length.490
NC_011898	GenBank	exon	5004	6476	.	+	1	Parent=CCEL_RS06175.t01
NC_011898	GenBank	gene	6552	8792	.	+	1	ID=CCEL_RS06180;Name=CCEL_RS06180;old_locus_tag=Ccel_1233
NC_011898	GenBank	mRNA	6552	8792	.	+	1	ID=CCEL_RS06180.t01;Parent=CCEL_RS06180
NC_011898	GenBank	CDS	6552	8792	.	+	1	ID=CCEL_RS06180.p01;Parent=CCEL_RS06180.t01;Name=CCEL_RS06180;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312553.1;old_locus_tag=Ccel_1233;product=family 43 glycosylhydrolase;protein_id=WP_015924738.1;transl_table=11;translation=length.746
NC_011898	GenBank	exon	6552	8792	.	+	1	Parent=CCEL_RS06180.t01
NC_011898	GenBank	gene	8876	10486	.	+	1	ID=CCEL_RS06185;Name=CCEL_RS06185;old_locus_tag=Ccel_1234
NC_011898	GenBank	mRNA	8876	10486	.	+	1	ID=CCEL_RS06185.t01;Parent=CCEL_RS06185
NC_011898	GenBank	CDS	8876	10486	.	+	1	ID=CCEL_RS06185.p01;Parent=CCEL_RS06185.t01;Name=CCEL_RS06185;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312554.1;old_locus_tag=Ccel_1234;product=carbohydrate-binding protein;protein_id=WP_015924739.1;transl_table=11;translation=length.536
NC_011898	GenBank	exon	8876	10486	.	+	1	Parent=CCEL_RS06185.t01
NC_011898	GenBank	gene	10561	12090	.	+	1	ID=CCEL_RS06190;Name=CCEL_RS06190;old_locus_tag=Ccel_1235
NC_011898	GenBank	mRNA	10561	12090	.	+	1	ID=CCEL_RS06190.t01;Parent=CCEL_RS06190
NC_011898	GenBank	CDS	10561	12090	.	+	1	ID=CCEL_RS06190.p01;Parent=CCEL_RS06190.t01;Name=CCEL_RS06190;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312555.1;old_locus_tag=Ccel_1235;product=family 43 glycosylhydrolase;protein_id=WP_015924740.1;transl_table=11;translation=length.509
NC_011898	GenBank	exon	10561	12090	.	+	1	Parent=CCEL_RS06190.t01
NC_011898	GenBank	gene	12179	15046	.	+	1	ID=CCEL_RS06195;Name=CCEL_RS06195;old_locus_tag=Ccel_1236
NC_011898	GenBank	mRNA	12179	15046	.	+	1	ID=CCEL_RS06195.t01;Parent=CCEL_RS06195
NC_011898	GenBank	CDS	12179	15046	.	+	1	ID=CCEL_RS06195.p01;Parent=CCEL_RS06195.t01;Name=CCEL_RS06195;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312556.1;old_locus_tag=Ccel_1236;product=hypothetical protein;protein_id=WP_015924741.1;transl_table=11;translation=length.955
NC_011898	GenBank	exon	12179	15046	.	+	1	Parent=CCEL_RS06195.t01
NC_011898	GenBank	gene	15155	16969	.	+	1	ID=CCEL_RS06200;Name=CCEL_RS06200;old_locus_tag=Ccel_1237
NC_011898	GenBank	mRNA	15155	16969	.	+	1	ID=CCEL_RS06200.t01;Parent=CCEL_RS06200
NC_011898	GenBank	CDS	15155	16969	.	+	1	ID=CCEL_RS06200.p01;Parent=CCEL_RS06200.t01;Name=CCEL_RS06200;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004616906.1;old_locus_tag=Ccel_1237;product=carbohydrate-binding protein;protein_id=WP_015924742.1;transl_table=11;translation=length.604
NC_011898	GenBank	exon	15155	16969	.	+	1	Parent=CCEL_RS06200.t01
NC_011898	GenBank	gene	16999	20367	.	+	1	ID=CCEL_RS06205;Name=CCEL_RS06205;old_locus_tag=Ccel_1238
NC_011898	GenBank	mRNA	16999	20367	.	+	1	ID=CCEL_RS06205.t01;Parent=CCEL_RS06205
NC_011898	GenBank	CDS	16999	20367	.	+	1	ID=CCEL_RS06205.p01;Parent=CCEL_RS06205.t01;Name=CCEL_RS06205;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004616907.1;old_locus_tag=Ccel_1238;product=carbohydrate-binding protein;protein_id=WP_015924743.1;transl_table=11;translation=length.1122
NC_011898	GenBank	exon	16999	20367	.	+	1	Parent=CCEL_RS06205.t01
NC_011898	GenBank	gene	20431	23478	.	+	1	ID=CCEL_RS06210;Name=CCEL_RS06210;old_locus_tag=Ccel_1239
NC_011898	GenBank	mRNA	20431	23478	.	+	1	ID=CCEL_RS06210.t01;Parent=CCEL_RS06210
NC_011898	GenBank	CDS	20431	23478	.	+	1	ID=CCEL_RS06210.p01;Parent=CCEL_RS06210.t01;Name=CCEL_RS06210;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312558.1;old_locus_tag=Ccel_1239;product=carbohydrate-binding protein;protein_id=WP_015924744.1;transl_table=11;translation=length.1015
NC_011898	GenBank	exon	20431	23478	.	+	1	Parent=CCEL_RS06210.t01