LOCUS NC_007946 6176 bp DNA linear CON 25-AUG-2019 DEFINITION Escherichia coli UTI89, complete genome. ACCESSION NC_007946 VERSION NC_007946.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN00000110 Assembly: GCF_000013265.1 KEYWORDS RefSeq. SOURCE Escherichia coli UTI89 ORGANISM Escherichia coli UTI89 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 6176) AUTHORS Chen,S.L., Hung,C.S., Xu,J., Reigstad,C.S., Magrini,V., Sabo,A., Blasiar,D., Bieri,T., Meyer,R.R., Ozersky,P., Armstrong,J.R., Fulton,R.S., Latreille,J.P., Spieth,J., Hooton,T.M., Mardis,E.R., Hultgren,S.J. and Gordon,J.I. TITLE Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5977-5982 (2006) PUBMED 16585510 REFERENCE 2 (bases 1 to 6176) AUTHORS Chen,S.L., Hung,C.-S., Xu,J., Reigstad,C.S., Magrini,V., Sabo,A., Blasiar,D., Bieri,T., Meyer,R.R., Ozersky,P., Armstrong,J.R., Fulton,R.S., Latreille,J.P., Spieth,J., Hooton,T.M., Mardis,E.R., Hultgren,S.J. and Gordon,J.I. TITLE Direct Submission JOURNAL Submitted (05-JAN-2006) Molecular Microbiology, Genetics, and Molecular Biology and Pharmacology, Washington University School of Medicine, 660 South Euclid Avenue, Saint Louis, MO 63110, USA COMMENT ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 08/25/2019 16:43:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Method :: Best-placed reference protein Annotation Software revision :: 4.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; Genes (total) :: 5,147 CDSs (total) :: 5,030 Genes (coding) :: 4,863 CDSs (with protein) :: 4,863 Genes (RNA) :: 117 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 89 ncRNAs :: 6 Pseudo Genes (total) :: 167 CDSs (without protein) :: 167 Pseudo Genes (ambiguous residues) :: 0 of 167 Pseudo Genes (frameshifted) :: 91 of 167 Pseudo Genes (incomplete) :: 79 of 167 Pseudo Genes (internal stop) :: 35 of 167 Pseudo Genes (multiple problems) :: 34 of 167 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## REFSEQ INFORMATION: The reference sequence was derived from CP000243. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria is available by contacting Scott Hultgren (hultgren@borcim.wustl.edu). Annotation Pipeline (PGAP) set; GeneMarkS-2+ repeat_region COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6176 /organism="Escherichia coli UTI89" /mol_type="genomic DNA" /strain="UTI89" /db_xref="taxon:364106" gene complement(1..1440) /locus_tag="UTI89_RS08480" /old_locus_tag="UTI89_C1752" CDS complement(1..1440) /locus_tag="UTI89_RS08480" /old_locus_tag="UTI89_C1752" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000012594.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="GH1" /protein_id="WP_000012592.1" /translation="MSGFKEDFLWGGAVAAHQLEGGWNEGGKGISIADVMTAGAHGVPR EVTEGVIDGLNYPNHEAIDFYHRYKTDIQLFAGMGFKCFRTSIAWTRIFPQGDEQEPNE EGLQFYDDLFDECLKQGMEPVVTLSHFEMPYHLVTKYGGWRNRKLIDFFIHFASTVFTR YKAKVKYWMTFNEINNQVNFSESLCPFTNSGILYSPEEDLNEREQIMYQAVHYELVASA LAVQTGKLINPEFNIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHARGYYPQH MLNYFARKGFNLDITPDDNAILARGCVDFIGFSYYMSFTTQFSPDNPQLDYVEPRDLVS NPYIDTSEWGWQIDPAGLRYSLNWFWDHFQLPLFIVENGFGAVDQRQADGTVNDHYRID YFSSHIREMKKAVVEDGVDLIGYTPWGCIDLVSAGTGEMKKRYGMIYVDKDNEGKGTLE RIRKASFYWYRDLIANNGENI" gene complement(1464..3137) /locus_tag="UTI89_RS08485" /old_locus_tag="UTI89_C1753" CDS complement(1464..3137) /locus_tag="UTI89_RS08485" /old_locus_tag="UTI89_C1753" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016233185.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|P26218|1.B.3.1.3" /protein_id="WP_001022795.1" /translation="MNIKTLNVSLLSISIITALFPLNAMATKLTIEQRLELLENELSQN KQELKATQNELGVYKFRLSTLQKSITENKYQSASLAEISATSPVADNIKNENGEQNSFA AAHTINGSQQIAVIESKGDKTTIESVTLKDISKYIKDDIGFSYQGYFRSGWGTGNHGSP QTYAAGSLGRFGNEMSGWFDLTLNQRVYNQDGRTANAVVTYDGNVGQQYNDAWFGDSAN ENIMQFSDIYLTTRGFLPFAREAEFWVGKHKLPQYEIQMLDWKTLTTDVAAGVGIENWA LGVGLFDMSLSRDDVDVYSRDFTRTSQMNTNSVDVRYRNIPLWDDATLSLMAKYSAPNK TDQQQDNENDDSYFEMKDSWMLASVLRQNLQRDTFNEFTLQVANNSYASSFASFSDASN TMAHGRYYYGDHTNGIAWRLISQGEMYLTDNIIMANALVYSHGEDVYSYESGAHSDFDS IRTVIRPAWIWNTWNQTGLELGWFKQQNKTQQGVTLNESAYKTTLWHALKVGESILGSR PEIRFYGTYINILDNELSNFKFNENSKDEFMAGIQAEVWW" gene complement(3192..3503) /locus_tag="UTI89_RS08490" /old_locus_tag="UTI89_C1754" CDS complement(3192..3503) /locus_tag="UTI89_RS08490" /old_locus_tag="UTI89_C1754" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001314746.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|U5MLJ3|4.A.3.2.9" /protein_id="WP_001304363.1" /translation="MFADEELVMELLINAGQARSDAMEAIRCAGQKDWQGATKLMASSE SACLQAHKIQTALISQDEGCGKIEVNLILIHAQDHLMNAILCQDLAREIISLRKELHA" gene complement(3531..4853) /locus_tag="UTI89_RS08495" /old_locus_tag="UTI89_C1755" CDS complement(3531..4853) /locus_tag="UTI89_RS08495" /old_locus_tag="UTI89_C1755" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001736301.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|C4X745|4.A.3.2.7" /protein_id="WP_001332138.1" /translation="MGLMASFERGMERFLVPVAIKLNSQKHVAAVRDGFVFTFPIIMAS SLIILINFAILSPDGFIAGLLHLNSIFPNLEKAQAIFTPVMNGSVNIMSIMIAFLVARN VAISYEQDDLLCGLTAIGAFFIVYTPYQMIDGQAFLTTKYLGAQGLFVAVIVALITSEI FCRLARNPKITITMPAAVPPAVARSFKVLLPIFFVMVFFSALNYCLTLISPAGLNDLIY TLIQTPLKHMGTNIFAVIILGAVGNFLWVLGIHGPNTTSAIRETVFSEANLENLSWAAQ HGTTWGAPYPITWTSINDAFANCGGSGMTLGLLLAIFIASKRAEYRDLAKMSFIPGIFN INEPIMFGLPIVLNPIMMVPFIMVPIVNCAIGYFFVSMEIIPPVAYAVPWTTPGPLIAF LGTGGNWLALLVGFLCLGVAIMIYLPFVIAANKVNNMATNG" gene complement(4968..5279) /locus_tag="UTI89_RS08500" /old_locus_tag="UTI89_C1756" CDS complement(4968..5279) /locus_tag="UTI89_RS08500" /old_locus_tag="UTI89_C1756" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000722572.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|U5MIE1|4.A.3.2.9" /protein_id="WP_000722574.1" /translation="MKKILLVCAAGMSTSMLVKRMIDHATAISLEVNISALAIAEAKGK IKNNEVDVVLLGPQVRFQKPEIEAVAQGKMPVAVIEMKDYGTMNGQAVLEFAMKLLQE" gene 5478..6176 /locus_tag="UTI89_RS08505" /old_locus_tag="UTI89_C1757" CDS 5478..6176 /locus_tag="UTI89_RS08505" /old_locus_tag="UTI89_C1757" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000577178.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="STP|GntR" /protein_id="WP_000577184.1" /translation="MIFQKIARLLKSEINGNSWHVGDLLPSEAELAVRYNVSRNTLRKA LSLLEGEGIIHRKHGSGTYIQKKNFVAHIDHMNSFSEIAHKSGKEAGSQIMKFEVQDAS PTIATELNLVTGEQVYYIKRLRFIEDNAAQLEETWMSVARFPDLTVSHMQKSKFSYIEN ECGIKIIGTFETFSPTFPTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIF EFQVKYFFPR" ORIGIN 1 tcatatattt tcgccattgt tggcgatgag atcccgatac cagtaaaacg atgctttacg 61 tatccgttcc agcgttccct tcccttcgtt gtctttatcg acataaatca ttccgtagcg 121 ttttttcatt tctcctgttc cggcagaaac caggtcaatg caaccccacg gggtgtagcc 181 aattaagtca acaccatctt caactacggc ttttttcatt tcccgaatat gggaggaaaa 241 gtaatcaatg cgatagtgat cgttcaccgt gccgtcagct tgtctctggt caaccgcacc 301 aaatccattt tcgacaataa acagcggcaa ctggaaatga tcccagaacc agttgagtga 361 ataacgtagc cctgccggat caatttgcca tccccattcg gatgtatcga tataagggtt 421 gctgaccaaa tctcgtggtt caacataatc cagttgcgga ttatctggcg aaaattgcgt 481 cgtaaaagac atgtagtagc taaagccgat aaagtcgaca caacctctgg caagaatcgc 541 gttatcatct ggtgtgatat cgaggttgaa tcctttcctt gcaaagtaat tcagcatatg 601 ttgcggataa tatccacgag catgaacatc agtaaaccag taacgacgat gcatcgcttt 661 cgtggccatc atcatatcgt tgggtgcaca cgtcagagga tagatggggc acatagcaat 721 catacagccg atattaaatt caggattgat cagttttcca gtctgtaccg ccagggcact 781 ggcaactaac tcataatgta ccgcctggta cattatttgt tcgcgctcat tgagatcttc 841 ctctggcgaa tacaagatac cggaattagt aaatggacac aggctttcgc tgaaattcac 901 ctgattattg atttcgttaa acgtcatcca gtactttact tttgctttat agcgcgtgaa 961 gaccgttgat gcgaagtgga taaaaaagtc gatcagttta cggtttcgcc agccaccata 1021 ttttgtcacc agatgataag gcatctcaaa atgcgaaagc gtcaccacag gttccattcc 1081 ctgcttcagg cattcatcga agagatcatc ataaaattgt aaaccctctt cattcggctc 1141 ctgttcgtca ccttgcggaa agattcgtgt ccaggcaatg gaagttcgaa agcatttgaa 1201 tcccatcccg gcaaataact gaatatctgt tttatagcga tgataaaaat caattgcttc 1261 atgattggga taattaagtc cgtcgataac gccttctgtc acttcacgcg gcaccccgtg 1321 agcgccagca gtcattacat cagcgatact gatgcctttt cctccttcat tccagccacc 1381 ttccaattga tgtgcggcta ccgcaccgcc ccataaaaaa tcttctttaa atcctgacat 1441 acacaactcc ttaactaaat agattaccac cagacttccg cctggatgcc ggccataaac 1501 tcgtctttgc tgttctcatt aaacttaaaa ttcgataatt cgttatccag aatattgata 1561 tacgtcccgt agaagcgaat ttctggtcgt gaacctaaaa tactttcacc cactttcaat 1621 gcatgccaga gtgtcgtttt ataagccgat tcatttagcg ttaccccctg ctgagttttg 1681 ttctgttgct taaaccagcc taattcaagc cccgtctgat tccatgtatt ccagatccag 1741 gccggtctta ttacggtgcg aatactgtca aaatcactat gagcgccact ttcataacta 1801 taaacatctt cgccatgaga atagacaagc gcgttagcca taataatatt gtcagtcaga 1861 tacatctcgc cctgagagat taaacgccag gcgatcccat tggtatggtc accatagtaa 1921 tagcgaccat gcgccatcgt attactggca tctgagaaac tggcaaaact gctggcatag 1981 gaattattgg caacctgtaa cgtaaattca ttaaacgtat cgcgttgcaa gttttgccgt 2041 aaaacagaag ccagcatcca gctatctttc atttcaaaat aactgtcgtc attttcatta 2101 tcttgttgtt gatccgtttt attaggtgcg gaatatttag ccattaatga caacgtcgca 2161 tcatcccata acgggatatt gcgataacga acatccacag aattggtatt catctgactg 2221 gtacgcgtaa aatcacgaga gtaaacatcg acatcatctc ggcttaagga catatcaaac 2281 agccctacac caagcgccca gttttcaatc cccacacccg cggcaacatc cgtggttaag 2341 gttttccagt ccagcatttg gatctcatat tgcgggagtt tatgtttgcc gacccagaat 2401 tctgcctctc gtgcgaaggg taaaaaacct cgcgttgtca gataaatatc actgaactgc 2461 atgatatttt cattggcact gtcaccaaac caggcatcgt tatactgctg acctacgttt 2521 ccatcatagg taacgaccgc atttgccgtt ctaccgtcct gattataaac acgctgattt 2581 aaggtcaggt caaaccaacc actcatctcg ttaccaaaac gtcccagaga acccgctgca 2641 taagtttgtg gtgagccgtg attaccggtg ccccagcctg agcggaagta cccctgatag 2701 ctgaatccaa tatcatcctt tatatattta ctgatatctt tcagggtcac gctttcgata 2761 gtggttttat cgcctttact ttcaataacg gcaatttgct gcgatccatt tatagtatgt 2821 gctgcggcaa acgagttctg ttcaccgttt tcatttttga tgttatcagc aacgggagat 2881 gtcgctgata tttcggcaag cgaggccgat tgatatttat tttctgtgat gcttttttgt 2941 aatgtcgaaa gtcggaattt atatactccc agttcattct gtgttgcttt cagctcttgt 3001 ttattttgcg acaattcatt ttcaagcaat tcaaggcgct gctctatggt taattttgtt 3061 gccatcgcgt tcaacggaaa caatgctgta ataatagaaa tagacaaaag gctgacgtta 3121 agcgtcttta tattcatgac ttatccttaa gagtgtagta atttcctcca gatatcgcac 3181 tggagaaaaa atcaggcatg gagctctttt cttaatgaaa taatttccct ggctaaatcc 3241 tggcataata ttgcattcat caaatgatcc tgtgcatgta tcagaattaa attaacttct 3301 attttgccac agccttcatc ctgactaatt aacgcggtct gaatcttatg cgcctgaaga 3361 caggcagatt cagagctggc cattagttta gttgcgccct gccagtcttt ttgcccggca 3421 caacgtatgg cttccatcgc atcagaacga gcctgtcccg cgttgatcag taactccata 3481 acaagttctt catctgcaaa catcacaatc tccttcctgg gtaaatggaa ttatccgtta 3541 gttgccatgt tattgacttt gttggcggcg ataacaaaag gtaaatagat cattatcgcc 3601 acacctaaac ataaaaaacc aaccagtaat gccagccagt ttcccccggt tccgaggaaa 3661 gcaattaaag gtccgggcgt agtccagggc acggcataag caaccggtgg aataatttcc 3721 atcgaaacaa agaagtaacc aatggcacag ttaacaatgg gaaccataat aaacggcacc 3781 atcatgatgg ggttaagtac aataggaagg ccgaacatta tcggttcatt gatattgaaa 3841 ataccgggga taaatgacat ttttgccaga tcacggtatt ccgcacgctt agaagcgata 3901 aaaatagcca acaataaccc caacgtcata cctgaaccgc cgcagttggc gaatgcatca 3961 ttaatagaag tccaggtaat cggatatggc gcgccccagg tagtgccgtg ttgagcggcc 4021 caggagagat tctccagatt agcctcagaa aaaacggttt ctcgaattgc cgacgttgta 4081 ttaggtccgt ggatccccag cacccagagg aaattaccca cagcccccag gataattacc 4141 gcaaagatat tcgttcccat atgtttgagc ggcgtctgga ttaatgtgta aatgagatca 4201 tttaatcctg ccggggatat caatgtcagg caataattaa gtgcggaaaa gaacaccatg 4261 acaaaaaata ttggcaataa aactttaaat gaacgcgcta ccgcaggagg tacagctgcc 4321 ggcatcgtta tggtgatttt ggggtttcga gctaagcgac aaaatatttc actggtgatc 4381 aatgcaacga taacagcaac aaacaacccc tgcgcgccga gatatttggt cgtcaggaat 4441 gcctgcccat ctatcatctg gtatggggta taaacaataa aaaatgctcc tattgccgtt 4501 aatccgcata aaagatcatc ttgctcatag ctaatcgcca cattcctggc gaccaggaaa 4561 gcaatcataa ttgacatgat atttacagaa ccattcatta ccggagtaaa aatagcttgt 4621 gctttttcaa ggttggggaa aatgctgttc agatgcagta atccggcaat aaaaccgtcg 4681 ggcgataata tggcaaagtt aattaatata attaatgagc ttgccatgat aattggaaac 4741 gtaaaaacga atccatctct caccgctgca acatgttttt gtgagtttaa cttgatagca 4801 actggaacaa gaaaacgttc cattccacgt tcgaatgatg ccattaatcc cattttttta 4861 tacctgttgt tctggatatt tatacatccc aataaagcat gtatgccata tccattttat 4921 gatgtgtgaa aagttagttc aggtaatagt ttaataatat tagattatta ctcttgcagt 4981 agtttcatcg caaattcaag aactgcctgt ccgttcattg tgccatagtc tttcatctcg 5041 ataacggcta caggcatttt cccctgtgca acggcttcaa tctctggttt ctgaaagcga 5101 acttgcggac caagtaaaac aacgtcaact tcgttatttt taattttccc tttagcctct 5161 gcaatcgcca atgcggaaat attaacttca agtgaaatag cggtagcatg atcaatcata 5221 cgtttaacca gcatactggt tgacatgccc gcagcgcaaa ctaacaatat ctttttcata 5281 tttttcctta ctggtatata acagactaca ttgtgtaaat atcatatccc acagtagcta 5341 cacgtcctgg tacattgatc acagtaatac agcaataaag ttgttcaaca acagggtgat 5401 aattaaacga ctcggccata cgataaacta atcaggtctc aactccttgt tttcaatggc 5461 tcttaaaagg tgcaaaagtg atttttcaaa agattgcccg cttacttaaa tccgagatca 5521 atggcaattc atggcatgtt ggtgatttgt tgccgtcaga agcggaactc gctgttcgtt 5581 ataatgtttc gcgtaatacc ctgcgtaagg cattatccct gctggaaggc gaaggaatta 5641 ttcacagaaa gcatggttca ggaacataca ttcaaaaaaa gaattttgtt gcacacattg 5701 atcacatgaa cagtttcagt gaaattgcac ataaaagcgg caaagaggca ggaagtcaga 5761 ttatgaaatt tgaagtgcag gatgcttctc ctactattgc gactgagctg aatttagtga 5821 ctggtgagca ggtttattac ataaagagac tgcgattcat tgaggataat gcagcacaat 5881 tagaagaaac gtggatgtca gtggcacgtt ttcctgattt aaccgtatcg catatgcaaa 5941 aatccaaatt ttcgtatatt gagaacgaat gcgggatcaa aatcattggc acctttgaaa 6001 ctttctcccc gacttttcct accccagaaa tcgccagtat tttacggatc agcccacggg 6061 atcccatact taaaattcag acccaggctg tggatagtaa ctctattccg ctggattatt 6121 cgttacttta cagcaatatt ttcgagttcc aggtaaagta cttttttccg cgataa //