##gff-version 3
##sequence-region NZ_DS990126 1 30322
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides plebeius DSM 17135
# Note Bacteroides plebeius DSM 17135 Scfld_02_9, whole genome shotgun sequence.
# date 17-DEC-2019
NZ_DS990126	GenBank	region	1	30322	.	+	1	ID=NZ_DS990126;Dbxref=BioProject:PRJNA224116,taxon:484018;Name=NZ_DS990126;Note=Bacteroides plebeius DSM 17135 Scfld_02_9%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence was derived from DS990126. On Mar 3,2009 this sequence version replaced NW_002063603.1. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement (pre-finishing),along with manual improvement that includes breaking apart any mis-assembly,and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally,PCAP (Huang,et al,Genome Research,13:2164,(2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive,sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine,the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. For answers to your questions regarding this assembly or project,or any other GSC genome project,please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement(pre-finishing),along with manual improvement that includes breaking apart any mis-assembly,and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xlsequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally,PCAP (Huang,et al,Genome Research,13:2164,(2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive,sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine,the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project,or any other GSC genome project,please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in September 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/17/2019 04:44:31 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.10 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 3,705 CDSs (total) :: 3,609 Genes (coding) :: 3,533 CDSs (with protein) :: 3,533 Genes (RNA) :: 96 rRNAs :: 6,6,4 (5S,16S,23S) complete rRNAs :: 6 (5S) partial rRNAs :: 6,4 (16S,23S) tRNAs :: 78 ncRNAs :: 2 Pseudo Genes (total) :: 76 CDSs (without protein) :: 76 Pseudo Genes (ambiguous residues) :: 0 of 76 Pseudo Genes (frameshifted) :: 32 of 76 Pseudo Genes (incomplete) :: 51 of 76 Pseudo Genes (internal stop) :: 7 of 76 Pseudo Genes (multiple problems) :: 12 of 76 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from DS990126. On Mar 3%2C 2009 this sequence version replaced NW_002063603.1. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement (pre-finishing)%2C along with manual improvement that includes breaking apart any mis-assembly%2C and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally%2C PCAP (Huang%2C et al%2C Genome Research%2C 13:2164%2C (2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive%2C sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine%2C the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. For answers to your questions regarding this assembly or project%2C or any other GSC genome project%2C please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)(DSM 17135). We have collected 7.9X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement(pre-finishing)%2C along with manual improvement that includes breaking apart any mis-assembly%2C and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xlsequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally%2C PCAP (Huang%2C et al%2C Genome Research%2C 13:2164%2C (2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive%2C sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine%2C the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project%2C or any other GSC genome project%2C please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in September 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/17/2019 04:44:31 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.10 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 3%2C705 CDSs (total) :: 3%2C609 Genes (coding) :: 3%2C533 CDSs (with protein) :: 3%2C533 Genes (RNA) :: 96 rRNAs :: 6%2C 6%2C 4 (5S%2C 16S%2C 23S) complete rRNAs :: 6 (5S) partial rRNAs :: 6%2C 4 (16S%2C 23S) tRNAs :: 78 ncRNAs :: 2 Pseudo Genes (total) :: 76 CDSs (without protein) :: 76 Pseudo Genes (ambiguous residues) :: 0 of 76 Pseudo Genes (frameshifted) :: 32 of 76 Pseudo Genes (incomplete) :: 51 of 76 Pseudo Genes (internal stop) :: 7 of 76 Pseudo Genes (multiple problems) :: 12 of 76 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-DEC-2019;host=Homo sapiens;isolation_source=biological product [ENVO:02000043];mol_type=genomic DNA;organism=Bacteroides plebeius DSM 17135;strain=DSM 17135;type_material=type strain of Bacteroides plebeius
NZ_DS990126	GenBank	gene	3	3485	.	+	1	ID=BACPLE_RS06865;Dbxref=GeneID:43184367;Name=BACPLE_RS06865;old_locus_tag=BACPLE_00609
NZ_DS990126	GenBank	mRNA	3	3485	.	+	1	ID=BACPLE_RS06865.t01;Parent=BACPLE_RS06865
NZ_DS990126	GenBank	CDS	3	3485	.	+	1	ID=BACPLE_RS06865.p01;Parent=BACPLE_RS06865.t01;Dbxref=GeneID:43184367;Name=BACPLE_RS06865;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007759027.1;old_locus_tag=BACPLE_00609;product=family 78 glycoside hydrolase catalytic domain;protein_id=WP_040312596.1;transl_table=11;translation=length.1160
NZ_DS990126	GenBank	exon	3	3485	.	+	1	Parent=BACPLE_RS06865.t01
NZ_DS990126	GenBank	gene	3571	4464	.	-	1	ID=BACPLE_RS06870;Dbxref=GeneID:43184368;Name=BACPLE_RS06870;old_locus_tag=BACPLE_00610
NZ_DS990126	GenBank	mRNA	3571	4464	.	-	1	ID=BACPLE_RS06870.t01;Parent=BACPLE_RS06870
NZ_DS990126	GenBank	CDS	3571	4464	.	-	1	ID=BACPLE_RS06870.p01;Parent=BACPLE_RS06870.t01;Dbxref=GeneID:43184368;Name=BACPLE_RS06870;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007561222.1;old_locus_tag=BACPLE_00610;product=AraC family transcriptional regulator;protein_id=WP_007560193.1;transl_table=11;translation=length.297
NZ_DS990126	GenBank	exon	3571	4464	.	-	1	Parent=BACPLE_RS06870.t01
NZ_DS990126	GenBank	gene	4627	6105	.	+	1	ID=BACPLE_RS06875;Dbxref=GeneID:43184369;Name=BACPLE_RS06875;old_locus_tag=BACPLE_00612
NZ_DS990126	GenBank	mRNA	4627	6105	.	+	1	ID=BACPLE_RS06875.t01;Parent=BACPLE_RS06875
NZ_DS990126	GenBank	CDS	4627	6105	.	+	1	ID=BACPLE_RS06875.p01;Parent=BACPLE_RS06875.t01;Dbxref=GeneID:43184369;Name=BACPLE_RS06875;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019149826.1;old_locus_tag=BACPLE_00612;product=rhamnulokinase;protein_id=WP_007560197.1;transl_table=11;translation=length.492
NZ_DS990126	GenBank	exon	4627	6105	.	+	1	Parent=BACPLE_RS06875.t01
NZ_DS990126	GenBank	gene	6112	7365	.	+	1	ID=BACPLE_RS06880;Dbxref=GeneID:43184370;Name=BACPLE_RS06880;old_locus_tag=BACPLE_00613
NZ_DS990126	GenBank	mRNA	6112	7365	.	+	1	ID=BACPLE_RS06880.t01;Parent=BACPLE_RS06880
NZ_DS990126	GenBank	CDS	6112	7365	.	+	1	ID=BACPLE_RS06880.p01;Parent=BACPLE_RS06880.t01;Dbxref=GeneID:43184370;eC_number=5.3.1.14;Name=BACPLE_RS06880;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009121896.1;old_locus_tag=BACPLE_00613;product=L-rhamnose isomerase;protein_id=WP_007560199.1;transl_table=11;translation=length.417
NZ_DS990126	GenBank	exon	6112	7365	.	+	1	Parent=BACPLE_RS06880.t01
NZ_DS990126	GenBank	gene	7431	8441	.	+	1	ID=BACPLE_RS06885;Dbxref=GeneID:43184371;Name=rhaT;locus_tag=BACPLE_RS06885;old_locus_tag=BACPLE_00614
NZ_DS990126	GenBank	mRNA	7431	8441	.	+	1	ID=BACPLE_RS06885.t01;Parent=BACPLE_RS06885
NZ_DS990126	GenBank	CDS	7431	8441	.	+	1	ID=BACPLE_RS06885.p01;Parent=BACPLE_RS06885.t01;Dbxref=GeneID:43184371;Name=rhaT;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004340036.1;locus_tag=BACPLE_RS06885;old_locus_tag=BACPLE_00614;product=L-rhamnose/proton symporter RhaT;protein_id=WP_007560200.1;transl_table=11;translation=length.336
NZ_DS990126	GenBank	exon	7431	8441	.	+	1	Parent=BACPLE_RS06885.t01
NZ_DS990126	GenBank	gene	8468	9277	.	+	1	ID=BACPLE_RS06890;Dbxref=GeneID:43184372;Name=rhaD;locus_tag=BACPLE_RS06890;old_locus_tag=BACPLE_00615
NZ_DS990126	GenBank	mRNA	8468	9277	.	+	1	ID=BACPLE_RS06890.t01;Parent=BACPLE_RS06890
NZ_DS990126	GenBank	CDS	8468	9277	.	+	1	ID=BACPLE_RS06890.p01;Parent=BACPLE_RS06890.t01;Dbxref=GeneID:43184372;eC_number=4.1.2.19;Name=rhaD;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_812677.1;locus_tag=BACPLE_RS06890;old_locus_tag=BACPLE_00615;product=rhamnulose-1-phosphate aldolase;protein_id=WP_007560202.1;transl_table=11;translation=length.269
NZ_DS990126	GenBank	exon	8468	9277	.	+	1	Parent=BACPLE_RS06890.t01
NZ_DS990126	GenBank	gene	9310	10464	.	+	1	ID=BACPLE_RS06895;Dbxref=GeneID:43184373;Name=fucO;locus_tag=BACPLE_RS06895;old_locus_tag=BACPLE_00616
NZ_DS990126	GenBank	mRNA	9310	10464	.	+	1	ID=BACPLE_RS06895.t01;Parent=BACPLE_RS06895
NZ_DS990126	GenBank	CDS	9310	10464	.	+	1	ID=BACPLE_RS06895.p01;Parent=BACPLE_RS06895.t01;Dbxref=GeneID:43184373;eC_number=1.1.1.77;Name=fucO;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_812678.1;locus_tag=BACPLE_RS06895;old_locus_tag=BACPLE_00616;product=lactaldehyde reductase;protein_id=WP_040312568.1;transl_table=11;translation=length.384
NZ_DS990126	GenBank	exon	9310	10464	.	+	1	Parent=BACPLE_RS06895.t01
NZ_DS990126	GenBank	gene	10684	11589	.	-	1	ID=BACPLE_RS06900;Dbxref=GeneID:43184374;Name=BACPLE_RS06900;old_locus_tag=BACPLE_00617
NZ_DS990126	GenBank	mRNA	10684	11589	.	-	1	ID=BACPLE_RS06900.t01;Parent=BACPLE_RS06900
NZ_DS990126	GenBank	CDS	10684	11589	.	-	1	ID=BACPLE_RS06900.p01;Parent=BACPLE_RS06900.t01;Dbxref=GeneID:43184374;Name=BACPLE_RS06900;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005844169.1;old_locus_tag=BACPLE_00617;product=serine acetyltransferase;protein_id=WP_040312571.1;transl_table=11;translation=length.301
NZ_DS990126	GenBank	exon	10684	11589	.	-	1	Parent=BACPLE_RS06900.t01
NZ_DS990126	GenBank	gene	11879	14029	.	-	1	ID=BACPLE_RS06905;Dbxref=GeneID:43184375;Name=rnr;locus_tag=BACPLE_RS06905;old_locus_tag=BACPLE_00619
NZ_DS990126	GenBank	mRNA	11879	14029	.	-	1	ID=BACPLE_RS06905.t01;Parent=BACPLE_RS06905
NZ_DS990126	GenBank	CDS	11879	14029	.	-	1	ID=BACPLE_RS06905.p01;Parent=BACPLE_RS06905.t01;Dbxref=GeneID:43184375;Name=rnr;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007566057.1;locus_tag=BACPLE_RS06905;old_locus_tag=BACPLE_00619;product=ribonuclease R;protein_id=WP_007560210.1;transl_table=11;translation=length.716
NZ_DS990126	GenBank	exon	11879	14029	.	-	1	Parent=BACPLE_RS06905.t01
NZ_DS990126	GenBank	gene	14178	15080	.	+	1	ID=BACPLE_RS06910;Dbxref=GeneID:43184376;Name=BACPLE_RS06910;old_locus_tag=BACPLE_00621
NZ_DS990126	GenBank	mRNA	14178	15080	.	+	1	ID=BACPLE_RS06910.t01;Parent=BACPLE_RS06910
NZ_DS990126	GenBank	CDS	14178	15080	.	+	1	ID=BACPLE_RS06910.p01;Parent=BACPLE_RS06910.t01;Dbxref=GeneID:43184376;Name=BACPLE_RS06910;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013618422.1;old_locus_tag=BACPLE_00621;product=cation transporter;protein_id=WP_007560214.1;transl_table=11;translation=length.300
NZ_DS990126	GenBank	exon	14178	15080	.	+	1	Parent=BACPLE_RS06910.t01
NZ_DS990126	GenBank	gene	15085	16095	.	+	1	ID=BACPLE_RS06915;Dbxref=GeneID:43184377;Name=BACPLE_RS06915;old_locus_tag=BACPLE_00622
NZ_DS990126	GenBank	mRNA	15085	16095	.	+	1	ID=BACPLE_RS06915.t01;Parent=BACPLE_RS06915
NZ_DS990126	GenBank	CDS	15085	16095	.	+	1	ID=BACPLE_RS06915.p01;Parent=BACPLE_RS06915.t01;Dbxref=GeneID:43184377;Name=BACPLE_RS06915;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005944890.1;old_locus_tag=BACPLE_00622;product=NAD(P)-dependent oxidoreductase;protein_id=WP_007560217.1;transl_table=11;translation=length.336
NZ_DS990126	GenBank	exon	15085	16095	.	+	1	Parent=BACPLE_RS06915.t01
NZ_DS990126	GenBank	gene	16092	17066	.	+	1	ID=BACPLE_RS06920;Dbxref=GeneID:43184378;Name=BACPLE_RS06920;old_locus_tag=BACPLE_00623
NZ_DS990126	GenBank	mRNA	16092	17066	.	+	1	ID=BACPLE_RS06920.t01;Parent=BACPLE_RS06920
NZ_DS990126	GenBank	CDS	16092	17066	.	+	1	ID=BACPLE_RS06920.p01;Parent=BACPLE_RS06920.t01;Dbxref=GeneID:43184378;Name=BACPLE_RS06920;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007566060.1;old_locus_tag=BACPLE_00623;product=phosphatase PAP2 family protein;protein_id=WP_040312599.1;transl_table=11;translation=length.324
NZ_DS990126	GenBank	exon	16092	17066	.	+	1	Parent=BACPLE_RS06920.t01
NZ_DS990126	GenBank	gene	17082	18068	.	-	1	ID=BACPLE_RS06925;Dbxref=GeneID:43184379;Name=dusB;locus_tag=BACPLE_RS06925;old_locus_tag=BACPLE_00624
NZ_DS990126	GenBank	mRNA	17082	18068	.	-	1	ID=BACPLE_RS06925.t01;Parent=BACPLE_RS06925
NZ_DS990126	GenBank	CDS	17082	18068	.	-	1	ID=BACPLE_RS06925.p01;Parent=BACPLE_RS06925.t01;Dbxref=GeneID:43184379;Name=dusB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007566061.1;locus_tag=BACPLE_RS06925;old_locus_tag=BACPLE_00624;product=tRNA dihydrouridine synthase DusB;protein_id=WP_007560221.1;transl_table=11;translation=length.328
NZ_DS990126	GenBank	exon	17082	18068	.	-	1	Parent=BACPLE_RS06925.t01
NZ_DS990126	GenBank	gene	18157	19428	.	+	1	ID=BACPLE_RS06930;Dbxref=GeneID:43184380;Name=BACPLE_RS06930;old_locus_tag=BACPLE_00625
NZ_DS990126	GenBank	mRNA	18157	19428	.	+	1	ID=BACPLE_RS06930.t01;Parent=BACPLE_RS06930
NZ_DS990126	GenBank	CDS	18157	19428	.	+	1	ID=BACPLE_RS06930.p01;Parent=BACPLE_RS06930.t01;Dbxref=GeneID:43184380;Name=BACPLE_RS06930;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005844184.1;old_locus_tag=BACPLE_00625;product=U32 family peptidase;protein_id=WP_007560223.1;transl_table=11;translation=length.423
NZ_DS990126	GenBank	exon	18157	19428	.	+	1	Parent=BACPLE_RS06930.t01
NZ_DS990126	GenBank	gene	19711	21207	.	+	1	ID=BACPLE_RS06935;Dbxref=GeneID:43184381;Name=BACPLE_RS06935;old_locus_tag=BACPLE_00626
NZ_DS990126	GenBank	mRNA	19711	21207	.	+	1	ID=BACPLE_RS06935.t01;Parent=BACPLE_RS06935
NZ_DS990126	GenBank	CDS	19711	21207	.	+	1	ID=BACPLE_RS06935.p01;Parent=BACPLE_RS06935.t01;Dbxref=GeneID:43184381;Name=BACPLE_RS06935;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF024356.0;old_locus_tag=BACPLE_00626;product=DUF3843 family protein;protein_id=WP_007560225.1;transl_table=11;translation=length.498
NZ_DS990126	GenBank	exon	19711	21207	.	+	1	Parent=BACPLE_RS06935.t01
NZ_DS990126	GenBank	gene	21208	22257	.	-	1	ID=BACPLE_RS06940;Dbxref=GeneID:43184382;Name=mnmA;locus_tag=BACPLE_RS06940;old_locus_tag=BACPLE_00627
NZ_DS990126	GenBank	mRNA	21208	22257	.	-	1	ID=BACPLE_RS06940.t01;Parent=BACPLE_RS06940
NZ_DS990126	GenBank	CDS	21208	22257	.	-	1	ID=BACPLE_RS06940.p01;Parent=BACPLE_RS06940.t01;Dbxref=GeneID:43184382;Name=mnmA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007833764.1;locus_tag=BACPLE_RS06940;old_locus_tag=BACPLE_00627;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_007560227.1;transl_table=11;translation=length.349
NZ_DS990126	GenBank	exon	21208	22257	.	-	1	Parent=BACPLE_RS06940.t01
NZ_DS990126	GenBank	gene	22268	25111	.	-	1	ID=BACPLE_RS06945;Dbxref=GeneID:43184383;Name=BACPLE_RS06945;old_locus_tag=BACPLE_00628
NZ_DS990126	GenBank	mRNA	22268	25111	.	-	1	ID=BACPLE_RS06945.t01;Parent=BACPLE_RS06945
NZ_DS990126	GenBank	CDS	22268	25111	.	-	1	ID=BACPLE_RS06945.p01;Parent=BACPLE_RS06945.t01;Dbxref=GeneID:43184383;Name=BACPLE_RS06945;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005943129.1;old_locus_tag=BACPLE_00628;product=beta-glucosidase;protein_id=WP_040312574.1;transl_table=11;translation=length.947
NZ_DS990126	GenBank	exon	22268	25111	.	-	1	Parent=BACPLE_RS06945.t01
NZ_DS990126	GenBank	gene	25468	27831	.	+	1	ID=BACPLE_RS06950;Dbxref=GeneID:43184384;Name=BACPLE_RS06950;old_locus_tag=BACPLE_00629
NZ_DS990126	GenBank	mRNA	25468	27831	.	+	1	ID=BACPLE_RS06950.t01;Parent=BACPLE_RS06950
NZ_DS990126	GenBank	CDS	25468	27831	.	+	1	ID=BACPLE_RS06950.p01;Parent=BACPLE_RS06950.t01;Dbxref=GeneID:43184384;Name=BACPLE_RS06950;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008653887.1;old_locus_tag=BACPLE_00629;product=hypothetical protein;protein_id=WP_148374610.1;transl_table=11;translation=length.787
NZ_DS990126	GenBank	exon	25468	27831	.	+	1	Parent=BACPLE_RS06950.t01
NZ_DS990126	GenBank	gene	28183	30288	.	+	1	ID=BACPLE_RS06955;Dbxref=GeneID:43184385;Name=BACPLE_RS06955;old_locus_tag=BACPLE_00631
NZ_DS990126	GenBank	mRNA	28183	30288	.	+	1	ID=BACPLE_RS06955.t01;Parent=BACPLE_RS06955
NZ_DS990126	GenBank	CDS	28183	30288	.	+	1	ID=BACPLE_RS06955.p01;Parent=BACPLE_RS06955.t01;Dbxref=GeneID:43184385;Name=BACPLE_RS06955;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009086969.1;old_locus_tag=BACPLE_00631;product=glycoside hydrolase family 97 protein;protein_id=WP_040312576.1;transl_table=11;translation=length.701
NZ_DS990126	GenBank	exon	28183	30288	.	+	1	Parent=BACPLE_RS06955.t01