##gff-version 3
##sequence-region NC_011898 1 8692
# conversion-by bp_genbank2gff3.pl
# organism Ruminiclostridium cellulolyticum H10
# Note Ruminiclostridium cellulolyticum H10, complete sequence.
# date 04-FEB-2020
NC_011898	GenBank	region	1	8692	.	+	1	ID=NC_011898;Dbxref=BioProject:PRJNA224116,taxon:394503;Name=NC_011898;Note=Ruminiclostridium cellulolyticum H10%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 3,537 CDSs (total) :: 3,447 Genes (coding) :: 3,334 CDSs (with protein) :: 3,334 Genes (RNA) :: 90 rRNAs :: 8,8,8 (5S,16S,23S) complete rRNAs :: 8,8,8 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 3%2C537 CDSs (total) :: 3%2C447 Genes (coding) :: 3%2C334 CDSs (with protein) :: 3%2C334 Genes (RNA) :: 90 rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) complete rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;culture_collection=ATCC:35319;date=04-FEB-2020;mol_type=genomic DNA;organism=Ruminiclostridium cellulolyticum H10;strain=H10;type_material=type strain of Ruminiclostridium cellulolyticum
NC_011898	GenBank	gene	1	2169	.	+	1	ID=CCEL_RS03700;Name=CCEL_RS03700;old_locus_tag=Ccel_0729
NC_011898	GenBank	mRNA	1	2169	.	+	1	ID=CCEL_RS03700.t01;Parent=CCEL_RS03700
NC_011898	GenBank	CDS	1	2169	.	+	1	ID=CCEL_RS03700.p01;Parent=CCEL_RS03700.t01;Name=CCEL_RS03700;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015924275.1;old_locus_tag=Ccel_0729;product=endoglucanase;protein_id=WP_015924275.1;transl_table=11;translation=length.722
NC_011898	GenBank	exon	1	2169	.	+	1	Parent=CCEL_RS03700.t01
NC_011898	GenBank	gene	2298	3680	.	+	1	ID=CCEL_RS03705;Name=CCEL_RS03705;old_locus_tag=Ccel_0730
NC_011898	GenBank	mRNA	2298	3680	.	+	1	ID=CCEL_RS03705.t01;Parent=CCEL_RS03705
NC_011898	GenBank	CDS	2298	3680	.	+	1	ID=CCEL_RS03705.p01;Parent=CCEL_RS03705.t01;Name=CCEL_RS03705;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020814341.1;old_locus_tag=Ccel_0730;product=endoglucanase;protein_id=WP_015924276.1;transl_table=11;translation=length.460
NC_011898	GenBank	exon	2298	3680	.	+	1	Parent=CCEL_RS03705.t01
NC_011898	GenBank	gene	3765	5942	.	+	1	ID=CCEL_RS03710;Name=CCEL_RS03710;old_locus_tag=Ccel_0731
NC_011898	GenBank	mRNA	3765	5942	.	+	1	ID=CCEL_RS03710.t01;Parent=CCEL_RS03710
NC_011898	GenBank	CDS	3765	5942	.	+	1	ID=CCEL_RS03710.p01;Parent=CCEL_RS03710.t01;Name=CCEL_RS03710;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014313404.1;old_locus_tag=Ccel_0731;product=endoglucanase;protein_id=WP_015924277.1;transl_table=11;translation=length.725
NC_011898	GenBank	exon	3765	5942	.	+	1	Parent=CCEL_RS03710.t01
NC_011898	GenBank	gene	6035	8692	.	+	1	ID=CCEL_RS03715;Name=CCEL_RS03715;old_locus_tag=Ccel_0732
NC_011898	GenBank	mRNA	6035	8692	.	+	1	ID=CCEL_RS03715.t01;Parent=CCEL_RS03715
NC_011898	GenBank	CDS	6035	8692	.	+	1	ID=CCEL_RS03715.p01;Parent=CCEL_RS03715.t01;Name=CCEL_RS03715;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015924278.1;old_locus_tag=Ccel_0732;product=cellulase;protein_id=WP_015924278.1;transl_table=11;translation=length.885
NC_011898	GenBank	exon	6035	8692	.	+	1	Parent=CCEL_RS03715.t01