Seed protein information help
| APIS family ID | pCARD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | Gasdermin | |||||||||||||
| CLAN ID | CLAN066 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:37398489 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_2661,phrog_2661 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter; | |||||||||||||
| Gene Location | Start: 2656; End: 3081; Strand: - | |||||||||||||
| Description | A phage CARD-only (pCARD) protein with a predicted CARD-like structure that can inhibit the CARD-containing bacterial gasdermin system. | |||||||||||||
Seed genomic context Download table help
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_015250.1 | 1 | 2208 | - | YP_004300582.1 | 735 | 83321.08 | 3.0 | 7.0132 | RIIA lysis inhibitor | PF02518.31 | |
| NC_015250.1 | 2205 | 2363 | - | YP_004300583.1 | 52 | 5978.01 | 2.0 | 9.6243 | hypothetical protein | ||
| NC_015250.1 | 2441 | 2656 | - | YP_004300584.1 | 71 | 7907.29 | 3.0 | 7.5250 | hypothetical protein | phrog_18881 | |
| NC_015250.1 | 2656 | 3081 | - | YP_004300585.1 | 141 | 16328.24 | -7.5 | 4.3573 | hypothetical protein | phrog_2661 ; phrog_2661 | |
| NC_015250.1 | 3078 | 3272 | - | YP_004300586.1 | 64 | 7181.42 | 2.5 | 8.0683 | conserved hypothetical bacterial protein | phrog_1761 ; phrog_5120 | |
| NC_015250.1 | 3274 | 3603 | - | YP_004300587.1 | 109 | 12335.21 | 2.5 | 8.4539 | hypothetical protein | phrog_21504 | |
| NC_015250.1 | 3596 | 5431 | - | YP_004300588.1 | 611 | 68468.50 | 2.5 | 6.9469 | DNA topoisomerase II large subunit | phrog_543 ; phrog_7229 | PF00204.30 ;PF16898.10 |
| NC_015250.1 | 5506 | 6027 | - | YP_004300589.1 | 173 | 19041.80 | 6.0 | 8.2979 | endolysin | PF01520.23 | |
| NC_015250.1 | 6049 | 6642 | - | YP_004300590.1 | 197 | 23237.55 | -1.0 | 6.3315 | conserved hypothetical bacterial protein | phrog_19333 |
Seed genomic context- JBrowse
Predicted 3D structure by alphafold2 with pTM = 0.78 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .