Seed protein information help
| APIS family ID | nergal | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | Type I CBASS | |||||||||||||
| CLAN ID | CLAN116 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Lopatina et al., 2024 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_8034,phrog_1273,phrog_4197,phrog_3011,phrog_3088 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio breoganii | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | Anti-CBASS type I protein; inhibits cyclic-oligonucleotide-based CBASS defense, probably by blocking signaling or effector activation. | |||||||||||||
Predicted 3D structure by alphafold2 with pTM = 0.43 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .