Seed protein information help
| APIS family ID | kali | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | DRT type III | |||||||||||||
| CLAN ID | CLAN115 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Lopatina et al., 2024 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_6102,phrog_345,phrog_5939,phrog_988,phrog_1056 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio breoganii | |||||||||||||
| Gene Location | Start: 26464; End: 26733; Strand: - | |||||||||||||
| Description | Anti-DRT type III protein; viral counter-defense factor that suppresses type III DRT activity during phage infection. | |||||||||||||
Seed genomic context Download table help
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
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Seed genomic context- JBrowse
Predicted 3D structure by alphafold2 with pTM = 0.2 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .