CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: XP_452162.1

Basic Information

GenBank IDXP_452162.1
FamilyGH125
Sequence Length607
UniProt IDQ6CV77(100,100)Download
Average pLDDT?89.80
CAZy50 ID45644
CAZy50 RepNo, CCG25178.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28985
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilySaccharomycetaceae
GenusKluyveromyces
SpeciesKluyveromyces lactis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVVRNLKSTN  KLTLFIVATT  LFLFFKYLVL  DNNSGKDNEY  LIASQTGQKV  DSSDVDTSKL60
QSKLDALKYS  DTVRSCPDYV  DYAGVAHYRK  QDDLDTELPF  QRPPKNCRTF  KSKLIEAIIE120
GLKPKFKDPN  LARLFENTFP  NTLDTTILYH  VTSNENKQLQ  NHRHPEYLYR  NNFPETFVVT180
GDIHAEWLRD  SAWQLSVYQP  LIKYDQGLRE  LIKGAINTQS  QLILSNAYCN  AFHPPLYTKI240
KKGEGHFDNV  FPRPNWRQVF  ECKYEIDSLA  SFLTLSRQYF  ENSPQESRLD  FITDDWLVAL300
TQVLTVLGRE  SVSTFDESGH  VNKFYYVFKR  NTDVASETLP  LAGTGNPVNL  NTGLIRSAFR360
PSDDSTIFQF  FIPGNAHMAT  ELERIVPILQ  DFEKVADQKE  LGVLLPRIIE  SCQEFAQAIR420
KGIEKYGIID  HPKFGKVYAY  EVDGYGSHLL  MDDANIPSLL  SLPDLGFLPV  DDPVYQNTRK480
MILTSKGNPY  FINGKYFQGI  GGPHIGIHNP  WPLSLIMKIR  TSNDEIEIMN  ALKMLLETTG540
DLGLIHESIN  GFVANGEVYT  RPWFAWANSE  FGKSIFNLAK  RKPWLIFEEY  APGDSFDLEE600
FIKTLDF607

Predicted 3D structure by AlphaFold2 with pLDDT = 89.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(128-575)

MVVRNLKSTN  KLTLFIVATT  LFLFFKYLVL  DNNSGKDNEY  LIASQTGQKV  DSSDVDTSKL60
QSKLDALKYS  DTVRSCPDYV  DYAGVAHYRK  QDDLDTELPF  QRPPKNCRTF  KSKLIEAIIE120
GLKPKFKDPN  LARLFENTFP  NTLDTTILYH  VTSNENKQLQ  NHRHPEYLYR  NNFPETFVVT180
GDIHAEWLRD  SAWQLSVYQP  LIKYDQGLRE  LIKGAINTQS  QLILSNAYCN  AFHPPLYTKI240
KKGEGHFDNV  FPRPNWRQVF  ECKYEIDSLA  SFLTLSRQYF  ENSPQESRLD  FITDDWLVAL300
TQVLTVLGRE  SVSTFDESGH  VNKFYYVFKR  NTDVASETLP  LAGTGNPVNL  NTGLIRSAFR360
PSDDSTIFQF  FIPGNAHMAT  ELERIVPILQ  DFEKVADQKE  LGVLLPRIIE  SCQEFAQAIR420
KGIEKYGIID  HPKFGKVYAY  EVDGYGSHLL  MDDANIPSLL  SLPDLGFLPV  DDPVYQNTRK480
MILTSKGNPY  FINGKYFQGI  GGPHIGIHNP  WPLSLIMKIR  TSNDEIEIMN  ALKMLLETTG540
DLGLIHESIN  GFVANGEVYT  RPWFAWANSE  FGKSIFNLAK  RKPWLIFEEY  APGDSFDLEE600
FIKTLDF607

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help