CAZyme3D

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Entry ID

Information for CAZyme ID: VWO96847.1

Basic Information

GenBank IDVWO96847.1
FamilyAA3_2
Sequence Length615
UniProt IDA0A5K1JYA9(100,100)Download
Average pLDDT?95.64
CAZy50 ID49609
CAZy50 RepNo, CDO69819.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34458
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderPolyporales
FamilyPolyporaceae
GenusGanoderma
SpeciesGanoderma boninense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSSCSLTALA  VVGAVALCAQ  SASASGVTSD  TSGIAGQTYD  YIVVGAGLAG  TTVAARLAEN60
SAISILLIEA  GGDDRGNSQV  YDIYEYAQAF  NGPLDWAWQS  DRGKVLHGGK  TLGGSSSING120
GHWTRGLNAQ  YDAMSSLLED  SEQSVGWNWS  GLFSYMKKAE  TFSAPNAQQA  AKGAQSIASY180
HGTTGPVQVT  YPDLMYGGPQ  MTDFVNTIVG  ITGINHYKDL  NGGTPNCVSI  TPLTLDWHRD240
DYRSSSIEAY  YTPVEDRRHG  WTILIQHQAT  KILFQNGTSV  PHVATGVEFG  KADGSGSRQV300
AYARKEVIVA  AGAINTPALL  QLSGIGDSAV  LGALGISTLV  DLKTVGRNFQ  EQTMNSLGAR360
GNGFNPGGRG  PTDAIAYPNI  YQLFGSSAAA  SVQKIQSSLS  KWAQSQAHNA  LSASALQTIF420
GIQAGLIINN  NAPVAELFFD  SGYPDDLGID  MWQLLPFSRG  NVTISSADPF  KKPAVNVNYF480
SVDWDLDVQI  AGARLSRKVL  STSPLADLRS  SVGETVPGLA  TVPDNGDGGS  DADWTKWINK540
DGTSAGFSAV  SHPIGTAAMM  RRSLGGVVDA  QLKVYDTANV  RVVDASVLPL  QVSAHLQSTL600
YGVAEKAADL  IKAAQ615

Predicted 3D structure by AlphaFold2 with pLDDT = 95.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(37-613)

MSSCSLTALA  VVGAVALCAQ  SASASGVTSD  TSGIAGQTYD  YIVVGAGLAG  TTVAARLAEN60
SAISILLIEA  GGDDRGNSQV  YDIYEYAQAF  NGPLDWAWQS  DRGKVLHGGK  TLGGSSSING120
GHWTRGLNAQ  YDAMSSLLED  SEQSVGWNWS  GLFSYMKKAE  TFSAPNAQQA  AKGAQSIASY180
HGTTGPVQVT  YPDLMYGGPQ  MTDFVNTIVG  ITGINHYKDL  NGGTPNCVSI  TPLTLDWHRD240
DYRSSSIEAY  YTPVEDRRHG  WTILIQHQAT  KILFQNGTSV  PHVATGVEFG  KADGSGSRQV300
AYARKEVIVA  AGAINTPALL  QLSGIGDSAV  LGALGISTLV  DLKTVGRNFQ  EQTMNSLGAR360
GNGFNPGGRG  PTDAIAYPNI  YQLFGSSAAA  SVQKIQSSLS  KWAQSQAHNA  LSASALQTIF420
GIQAGLIINN  NAPVAELFFD  SGYPDDLGID  MWQLLPFSRG  NVTISSADPF  KKPAVNVNYF480
SVDWDLDVQI  AGARLSRKVL  STSPLADLRS  SVGETVPGLA  TVPDNGDGGS  DADWTKWINK540
DGTSAGFSAV  SHPIGTAAMM  RRSLGGVVDA  QLKVYDTANV  RVVDASVLPL  QVSAHLQSTL600
YGVAEKAADL  IKAAQ615

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help