CAZyme3D

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Entry ID

Information for CAZyme ID: VWO94945.1

Basic Information

GenBank IDVWO94945.1
FamilyAA3_2
Sequence Length238
UniProt IDA0A5K1JTC2(100,100)Download
Average pLDDT?90.99
CAZy50 ID53504
CAZy50 RepNo, VWO94148.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34458
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderPolyporales
FamilyPolyporaceae
GenusGanoderma
SpeciesGanoderma boninense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKALVEFLKY  LFLGTGLLSS  AFQFSSTFIP  TRLLRDDLTI  AKDDPRNLDT  TLPENRPDIE60
FMHIPVDCIR  AQTSGKGAFT  FLVTLIRPKS  EGTVRLVSKD  ARTPPAVDLG  YFNILEDYVP120
LRAGVRLALR  VAEDVRKQGY  PFTDLVVPEV  DNDEGIDSFI  RENVMSCFHY  TSTCRMGPEV180
DGSQPSVVDA  ELKVHGVKGL  RVCDASVFPE  IVGSHTMAPA  VMVAEKCAEM  IKAAWIGR238

Predicted 3D structure by AlphaFold2 with pLDDT = 90.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(7-233)

MKALVEFLKY  LFLGTGLLSS  AFQFSSTFIP  TRLLRDDLTI  AKDDPRNLDT  TLPENRPDIE60
FMHIPVDCIR  AQTSGKGAFT  FLVTLIRPKS  EGTVRLVSKD  ARTPPAVDLG  YFNILEDYVP120
LRAGVRLALR  VAEDVRKQGY  PFTDLVVPEV  DNDEGIDSFI  RENVMSCFHY  TSTCRMGPEV180
DGSQPSVVDA  ELKVHGVKGL  RVCDASVFPE  IVGSHTMAPA  VMVAEKCAEM  IKAAWIGR238

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help