CAZyme3D

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Entry ID

Information for CAZyme ID: VWO94942.1

Basic Information

GenBank IDVWO94942.1
FamilyAA3_2
Sequence Length589
UniProt IDA0A5K1JSS2(100,100)Download
Average pLDDT?93.81
CAZy50 ID53504
CAZy50 RepNo, VWO94148.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34458
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderPolyporales
FamilyPolyporaceae
GenusGanoderma
SpeciesGanoderma boninense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

ELSPKDVGAR  VPVSPNLAPE  TYTYDYIIVG  GGTAGCTLAS  RLTEDPSVTV  LLIERGPVAD60
TWGSRVPLIS  ADPDGKDTLA  HRWWSLPLEG  AGDSYVEVVR  GEGLGGSSRI  NAMLYTRGTP120
GDYNHWKALG  NDGWGYDDVE  PYFMKSEKCR  THPASNFRGQ  EGPWENRTSP  DPFRTNALVE180
AALQKLGIPH  VPDFNSPDAP  AACTGVVECT  MDTNSFRHST  FRAFLPPELT  QQRKAQLKIV240
PNTIATRIEF  AGGGRNLRAI  GVHFEGRTMR  TALDRYYAKA  RREVVLCAGA  LGSPQVLMLS300
GIGPKEHLIE  HRIPVVRDLP  AVGAHLRDHL  GVPVMFEVPL  SDTMHHIEGS  TTKQVIELLK360
YLITGGGLLS  APLQSCSTFF  PSRLLDDDGV  LSVANPRDLD  ASVPENAPDI  ELMHISHNSS420
ECKTPDGIGV  YSLMVSLIRP  KSEGMVRLAT  SNPRAMPNVD  LGYLTSPEDY  IPLRKGVRFV480
LRIVEEVRKQ  GYPIKGLAVP  TGKSDEDLDK  FIRGGLRTCY  HYTSTCRMGA  GVHGERPSVV540
DTQLRVHGVQ  GLRVCDASVF  PEIVGSHTMA  PVVMVAEKCA  DLLKGRKHA589

Predicted 3D structure by AlphaFold2 with pLDDT = 93.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(23-584)

ELSPKDVGAR  VPVSPNLAPE  TYTYDYIIVG  GGTAGCTLAS  RLTEDPSVTV  LLIERGPVAD60
TWGSRVPLIS  ADPDGKDTLA  HRWWSLPLEG  AGDSYVEVVR  GEGLGGSSRI  NAMLYTRGTP120
GDYNHWKALG  NDGWGYDDVE  PYFMKSEKCR  THPASNFRGQ  EGPWENRTSP  DPFRTNALVE180
AALQKLGIPH  VPDFNSPDAP  AACTGVVECT  MDTNSFRHST  FRAFLPPELT  QQRKAQLKIV240
PNTIATRIEF  AGGGRNLRAI  GVHFEGRTMR  TALDRYYAKA  RREVVLCAGA  LGSPQVLMLS300
GIGPKEHLIE  HRIPVVRDLP  AVGAHLRDHL  GVPVMFEVPL  SDTMHHIEGS  TTKQVIELLK360
YLITGGGLLS  APLQSCSTFF  PSRLLDDDGV  LSVANPRDLD  ASVPENAPDI  ELMHISHNSS420
ECKTPDGIGV  YSLMVSLIRP  KSEGMVRLAT  SNPRAMPNVD  LGYLTSPEDY  IPLRKGVRFV480
LRIVEEVRKQ  GYPIKGLAVP  TGKSDEDLDK  FIRGGLRTCY  HYTSTCRMGA  GVHGERPSVV540
DTQLRVHGVQ  GLRVCDASVF  PEIVGSHTMA  PVVMVAEKCA  DLLKGRKHA589

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help