CAZyme3D

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Entry ID

Information for CAZyme ID: VWO94836.1

Basic Information

GenBank IDVWO94836.1
FamilyCBM1, GH6
Sequence Length436
UniProt IDA0A5K1JT39(100,100)Download
Average pLDDT?88.01
CAZy50 ID69908
CAZy50 RepNo, QRW27543.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34458
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderPolyporales
FamilyPolyporaceae
GenusGanoderma
SpeciesGanoderma boninense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSKFASLYAL  LAVLPAIVSA  QSPVWGQCGG  IGWSGATTCA  SGSSWCKHLR  PATTSAPGST60
SVPSSTSTSG  GSAPSTTPAA  GNPFVGYTAY  LSPYYAAEIQ  AAAANVSDSS  LAAKAASVAN120
IPTFTWLDSV  SKVPDLGTYL  SDASALQKSS  GEKQLVQIVV  YDLPDRDCAA  KASNGEFSIA180
DGGQEKYFDY  IDQIVAQIKQ  FPDVRVVAVI  EPDSLANLVT  NLNVQKCANA  EATYKACVTY240
ALQQLSAVGV  YMYMDAGHAG  WLGWPANISP  AATLFASLFK  AADSSPFVRG  LATNVANYNA300
LTAASPDPIT  QGDPNYDESH  YINALGPMLA  SAGFPAQFVV  DQGRAGQQNL  RQQWGDWCNI360
KGAGFGTRPT  TNTGNSLIDA  IVWVKPGGES  DGTSNSSSPR  FDSTCSLSDA  TQPAPEAGTW420
FQAYFETLVS  AANPPL436

Predicted 3D structure by AlphaFold2 with pLDDT = 88.01 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM1(25-44)+GH6(100-396)

MSKFASLYAL  LAVLPAIVSA  QSPVWGQCGG  IGWSGATTCA  SGSSWCKHLR  PATTSAPGST60
SVPSSTSTSG  GSAPSTTPAA  GNPFVGYTAY  LSPYYAAEIQ  AAAANVSDSS  LAAKAASVAN120
IPTFTWLDSV  SKVPDLGTYL  SDASALQKSS  GEKQLVQIVV  YDLPDRDCAA  KASNGEFSIA180
DGGQEKYFDY  IDQIVAQIKQ  FPDVRVVAVI  EPDSLANLVT  NLNVQKCANA  EATYKACVTY240
ALQQLSAVGV  YMYMDAGHAG  WLGWPANISP  AATLFASLFK  AADSSPFVRG  LATNVANYNA300
LTAASPDPIT  QGDPNYDESH  YINALGPMLA  SAGFPAQFVV  DQGRAGQQNL  RQQWGDWCNI360
KGAGFGTRPT  TNTGNSLIDA  IVWVKPGGES  DGTSNSSSPR  FDSTCSLSDA  TQPAPEAGTW420
FQAYFETLVS  AANPPL436

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help