Information for CAZyme ID: VVV03002.1
Basic Information
| GenBank ID | VVV03002.1 |
| Family | CBM41, CBM48, GH13_13 |
| Sequence Length | 1198 |
| UniProt ID | A0A5Q4ZPL4(100,100) |
| Average pLDDT? | 91.42 |
| CAZy50 ID | 7730 |
| CAZy50 Rep | No, QOD68143.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 80852 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Aliivibrio |
| Species | Aliivibrio wodanis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MNNTNILFKR SYLTKSILTI MASSMLFGCN SSSDDKDTPI APNNTVKVYF KSASNTYDNA | 60 |
| SLYVWNDDDC GAYAGDTSDA SDWNKGLTPD GEDPELGVYW SLKADKENAS QCINFIPRVG | 120 |
| ENNDKPLADF NGKVDLSQTN ADGEVFTQEG VAAVYPELIP TGDIPANHAR VYMNTPDGDT | 180 |
| NAFRLHVWNE GSCTNLEGDN SAWPGIESSG VSDTYGVYWD IPVNGTDNCL NIIPNNKSDG | 240 |
| DYQTANLKIE FDKTTAIGSA AFIFKGTDKV YYEPLANKPA NAVELLGASA IFASDEVLLI | 300 |
| NSKDATKIEL YYAKNAGMTF DSKSKKILGS DNVISSDILS SSEEWKGSEE KPHLASDFIA | 360 |
| FDIDFSQSDI TLKEALKGQL ILVASDATGV IKATEVQTAS ALDSLYASQA VNEKFGALIN | 420 |
| SDGSTTFRLW APTSQSVVLV SYDNDKQESK KIPMIFNQET GSWVAENTEL AHGSFYKYEV | 480 |
| TVYHPATDKI ETYQVTDPYS LSLSTNSELS QVIDLNNAEV VPAGWNSLTP PHAQDNPAEF | 540 |
| ILYEAQIRDF SALDQSTPAD SRGKYSAFNQ ADSAPVKHLK SLSDSGVSHL HLLPTFDIAT | 600 |
| INEDVTQIAN IDEPFTKLCG LKPTIKDDKD FGSYCSSSDS IASVFDEMLE KDSPENAVVQ | 660 |
| RLNGYVRDVD GFNWGYDPFH YTVPEGSYSS NPDGMTRIKE FREMVMAVKN DIGMNVVMDI | 720 |
| VYNHTNESGV SNKSVLDRIV PWYYQRLNEF SGNVENSTCC SNTAPENTMM GKLISDSLVV | 780 |
| WAQDYKIDAF RWDLMGHHPK TQILETLAAV KAVDPETYFY GEGWNFGEVG NDRQFTQATQ | 840 |
| PNMYGTGIGT FSDRLRDSVR GGGPFDSEMG LRENQGFGNG AFVLPNEQNK TSKETALHLA | 900 |
| DLTRLGMAGN LSDYPFVDSK NNSIKGSELD YNGQPAGYAK DAWEIQNYVS KHDNQTLWDN | 960 |
| NQYKIGYDVS AEIRTRMQAV SLATAMLGQG VPFTHMGSEL LRSKSMQRDS YDSGDWYNRV | 1020 |
| DFTAQDNNWD VGLPREDKDG SNWTVIQDVV DNSAENAMPT TDNIQAMKAF YEEFASLRAS | 1080 |
| SGLLTLGHGE EIIKRVKFHN TGSDQNVGVI VMSMDNSGSN YDASIDQDRD GLVVVVNATP | 1140 |
| TALSEFANFD ATGYTLHSIQ ATNGAKSIAR NGSENSSVTN NKLNTPAWSV AVFEKAHN | 1198 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.42 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM41(44-157)+CBM41(167-274)+CBM48(414-502)+GH13_13(578-1000)
| MNNTNILFKR SYLTKSILTI MASSMLFGCN SSSDDKDTPI APNNTVKVYF KSASNTYDNA | 60 |
| SLYVWNDDDC GAYAGDTSDA SDWNKGLTPD GEDPELGVYW SLKADKENAS QCINFIPRVG | 120 |
| ENNDKPLADF NGKVDLSQTN ADGEVFTQEG VAAVYPELIP TGDIPANHAR VYMNTPDGDT | 180 |
| NAFRLHVWNE GSCTNLEGDN SAWPGIESSG VSDTYGVYWD IPVNGTDNCL NIIPNNKSDG | 240 |
| DYQTANLKIE FDKTTAIGSA AFIFKGTDKV YYEPLANKPA NAVELLGASA IFASDEVLLI | 300 |
| NSKDATKIEL YYAKNAGMTF DSKSKKILGS DNVISSDILS SSEEWKGSEE KPHLASDFIA | 360 |
| FDIDFSQSDI TLKEALKGQL ILVASDATGV IKATEVQTAS ALDSLYASQA VNEKFGALIN | 420 |
| SDGSTTFRLW APTSQSVVLV SYDNDKQESK KIPMIFNQET GSWVAENTEL AHGSFYKYEV | 480 |
| TVYHPATDKI ETYQVTDPYS LSLSTNSELS QVIDLNNAEV VPAGWNSLTP PHAQDNPAEF | 540 |
| ILYEAQIRDF SALDQSTPAD SRGKYSAFNQ ADSAPVKHLK SLSDSGVSHL HLLPTFDIAT | 600 |
| INEDVTQIAN IDEPFTKLCG LKPTIKDDKD FGSYCSSSDS IASVFDEMLE KDSPENAVVQ | 660 |
| RLNGYVRDVD GFNWGYDPFH YTVPEGSYSS NPDGMTRIKE FREMVMAVKN DIGMNVVMDI | 720 |
| VYNHTNESGV SNKSVLDRIV PWYYQRLNEF SGNVENSTCC SNTAPENTMM GKLISDSLVV | 780 |
| WAQDYKIDAF RWDLMGHHPK TQILETLAAV KAVDPETYFY GEGWNFGEVG NDRQFTQATQ | 840 |
| PNMYGTGIGT FSDRLRDSVR GGGPFDSEMG LRENQGFGNG AFVLPNEQNK TSKETALHLA | 900 |
| DLTRLGMAGN LSDYPFVDSK NNSIKGSELD YNGQPAGYAK DAWEIQNYVS KHDNQTLWDN | 960 |
| NQYKIGYDVS AEIRTRMQAV SLATAMLGQG VPFTHMGSEL LRSKSMQRDS YDSGDWYNRV | 1020 |
| DFTAQDNNWD VGLPREDKDG SNWTVIQDVV DNSAENAMPT TDNIQAMKAF YEEFASLRAS | 1080 |
| SGLLTLGHGE EIIKRVKFHN TGSDQNVGVI VMSMDNSGSN YDASIDQDRD GLVVVVNATP | 1140 |
| TALSEFANFD ATGYTLHSIQ ATNGAKSIAR NGSENSSVTN NKLNTPAWSV AVFEKAHN | 1198 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.