Information for CAZyme ID: VTR39110.1
Basic Information
GenBank ID | VTR39110.1 |
Family | GH139 |
Sequence Length | 773 |
UniProt ID | A0A4U9UYG7(100,100)![]() |
Average pLDDT? | 95.14 |
CAZy50 ID | 25511 |
CAZy50 Rep | No, AGA77967.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 259 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | Sphingobacteriia |
Order | Sphingobacteriales |
Family | Sphingobacteriaceae |
Genus | Sphingobacterium |
Species | Sphingobacterium thalpophilum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MTKKFIFSII FFLVTVLSPV VAQDIRWKDY YVSWTTQSKN SSESMPMGGG DIGLNVWVED | 60 |
GELLLYLGKT GAFDENNTLL KLGRIRVHLY PNPFEGDKFL QELQLDKGHI LVKGEHQGVK | 120 |
AEILVWVDVF SPNVHLEIKA NQNVNVQAAY ENWRFQDLFP KKKENNANSW KWAPPGPVVT | 180 |
YKDQVEAAAN KIFFYHQNQD STAFDIVVNQ QGLSAIKDSL YNPLKKLTSG GLFQGHDFIY | 240 |
AGQLSGRYMN TPYQSWILKS QRAKRNHALQ VTLHVDQSMQ LSRWKTDVNT LAKPKVSVLA | 300 |
TKRATESWWE AFWNRSYIVI LPEQKDPENE AWQVGRNYQL FRFMLACNAY GNYPTKFNGG | 360 |
LFTYDPVAVD SSFHFTPDFR NWGGGTHTAQ NQRLVYWPML KSGDFDMLPA QFKFYQRILK | 420 |
NAEWRSRVYW GHGGASFTEQ IENFGLPNPA EYNWKRPKDF DKGLEYNAWL EYQWDTVLEF | 480 |
CMMMLETDRY QGADIRSYIP FIESCLRFFD EHYHYRARQL GSKLLDDKGH LVLYPGSSAE | 540 |
TYKMAYNAST TIAALQQVTQ RMLTLPETLV SPGLRKYLQG FLSRIPPLPL RELNGKTLLA | 600 |
PAQQWARINN TESPQLYGVY PWGIYGIGRP DIDIAINTYR YDPDVRKFRS HVGWKQHNIF | 660 |
AARLGLTDEA KELTTLKLKN ADRRFPTFWG PGFDWVPDHN WGGSGMIGLQ EMLLQATDDK | 720 |
IYLFPAWPKD WDVDFKLHAP DQTTIEGRLK SGKLSDLKVS PQEREADIVN LSQ | 773 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.14 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH139(3-772)
MTKKFIFSII FFLVTVLSPV VAQDIRWKDY YVSWTTQSKN SSESMPMGGG DIGLNVWVED | 60 |
GELLLYLGKT GAFDENNTLL KLGRIRVHLY PNPFEGDKFL QELQLDKGHI LVKGEHQGVK | 120 |
AEILVWVDVF SPNVHLEIKA NQNVNVQAAY ENWRFQDLFP KKKENNANSW KWAPPGPVVT | 180 |
YKDQVEAAAN KIFFYHQNQD STAFDIVVNQ QGLSAIKDSL YNPLKKLTSG GLFQGHDFIY | 240 |
AGQLSGRYMN TPYQSWILKS QRAKRNHALQ VTLHVDQSMQ LSRWKTDVNT LAKPKVSVLA | 300 |
TKRATESWWE AFWNRSYIVI LPEQKDPENE AWQVGRNYQL FRFMLACNAY GNYPTKFNGG | 360 |
LFTYDPVAVD SSFHFTPDFR NWGGGTHTAQ NQRLVYWPML KSGDFDMLPA QFKFYQRILK | 420 |
NAEWRSRVYW GHGGASFTEQ IENFGLPNPA EYNWKRPKDF DKGLEYNAWL EYQWDTVLEF | 480 |
CMMMLETDRY QGADIRSYIP FIESCLRFFD EHYHYRARQL GSKLLDDKGH LVLYPGSSAE | 540 |
TYKMAYNAST TIAALQQVTQ RMLTLPETLV SPGLRKYLQG FLSRIPPLPL RELNGKTLLA | 600 |
PAQQWARINN TESPQLYGVY PWGIYGIGRP DIDIAINTYR YDPDVRKFRS HVGWKQHNIF | 660 |
AARLGLTDEA KELTTLKLKN ADRRFPTFWG PGFDWVPDHN WGGSGMIGLQ EMLLQATDDK | 720 |
IYLFPAWPKD WDVDFKLHAP DQTTIEGRLK SGKLSDLKVS PQEREADIVN LSQ | 773 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.