CAZyme3D

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Entry ID

Information for CAZyme ID: VTR39110.1

Basic Information

GenBank IDVTR39110.1
FamilyGH139
Sequence Length773
UniProt IDA0A4U9UYG7(100,100)Download
Average pLDDT?95.14
CAZy50 ID25511
CAZy50 RepNo, AGA77967.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID259
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium thalpophilum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKKFIFSII  FFLVTVLSPV  VAQDIRWKDY  YVSWTTQSKN  SSESMPMGGG  DIGLNVWVED60
GELLLYLGKT  GAFDENNTLL  KLGRIRVHLY  PNPFEGDKFL  QELQLDKGHI  LVKGEHQGVK120
AEILVWVDVF  SPNVHLEIKA  NQNVNVQAAY  ENWRFQDLFP  KKKENNANSW  KWAPPGPVVT180
YKDQVEAAAN  KIFFYHQNQD  STAFDIVVNQ  QGLSAIKDSL  YNPLKKLTSG  GLFQGHDFIY240
AGQLSGRYMN  TPYQSWILKS  QRAKRNHALQ  VTLHVDQSMQ  LSRWKTDVNT  LAKPKVSVLA300
TKRATESWWE  AFWNRSYIVI  LPEQKDPENE  AWQVGRNYQL  FRFMLACNAY  GNYPTKFNGG360
LFTYDPVAVD  SSFHFTPDFR  NWGGGTHTAQ  NQRLVYWPML  KSGDFDMLPA  QFKFYQRILK420
NAEWRSRVYW  GHGGASFTEQ  IENFGLPNPA  EYNWKRPKDF  DKGLEYNAWL  EYQWDTVLEF480
CMMMLETDRY  QGADIRSYIP  FIESCLRFFD  EHYHYRARQL  GSKLLDDKGH  LVLYPGSSAE540
TYKMAYNAST  TIAALQQVTQ  RMLTLPETLV  SPGLRKYLQG  FLSRIPPLPL  RELNGKTLLA600
PAQQWARINN  TESPQLYGVY  PWGIYGIGRP  DIDIAINTYR  YDPDVRKFRS  HVGWKQHNIF660
AARLGLTDEA  KELTTLKLKN  ADRRFPTFWG  PGFDWVPDHN  WGGSGMIGLQ  EMLLQATDDK720
IYLFPAWPKD  WDVDFKLHAP  DQTTIEGRLK  SGKLSDLKVS  PQEREADIVN  LSQ773

Predicted 3D structure by AlphaFold2 with pLDDT = 95.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH139(3-772)

MTKKFIFSII  FFLVTVLSPV  VAQDIRWKDY  YVSWTTQSKN  SSESMPMGGG  DIGLNVWVED60
GELLLYLGKT  GAFDENNTLL  KLGRIRVHLY  PNPFEGDKFL  QELQLDKGHI  LVKGEHQGVK120
AEILVWVDVF  SPNVHLEIKA  NQNVNVQAAY  ENWRFQDLFP  KKKENNANSW  KWAPPGPVVT180
YKDQVEAAAN  KIFFYHQNQD  STAFDIVVNQ  QGLSAIKDSL  YNPLKKLTSG  GLFQGHDFIY240
AGQLSGRYMN  TPYQSWILKS  QRAKRNHALQ  VTLHVDQSMQ  LSRWKTDVNT  LAKPKVSVLA300
TKRATESWWE  AFWNRSYIVI  LPEQKDPENE  AWQVGRNYQL  FRFMLACNAY  GNYPTKFNGG360
LFTYDPVAVD  SSFHFTPDFR  NWGGGTHTAQ  NQRLVYWPML  KSGDFDMLPA  QFKFYQRILK420
NAEWRSRVYW  GHGGASFTEQ  IENFGLPNPA  EYNWKRPKDF  DKGLEYNAWL  EYQWDTVLEF480
CMMMLETDRY  QGADIRSYIP  FIESCLRFFD  EHYHYRARQL  GSKLLDDKGH  LVLYPGSSAE540
TYKMAYNAST  TIAALQQVTQ  RMLTLPETLV  SPGLRKYLQG  FLSRIPPLPL  RELNGKTLLA600
PAQQWARINN  TESPQLYGVY  PWGIYGIGRP  DIDIAINTYR  YDPDVRKFRS  HVGWKQHNIF660
AARLGLTDEA  KELTTLKLKN  ADRRFPTFWG  PGFDWVPDHN  WGGSGMIGLQ  EMLLQATDDK720
IYLFPAWPKD  WDVDFKLHAP  DQTTIEGRLK  SGKLSDLKVS  PQEREADIVN  LSQ773

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help