CAZyme3D

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Entry ID

Information for CAZyme ID: VTO17891.1

Basic Information

GenBank IDVTO17891.1
FamilyCBM91
Sequence Length263
UniProt IDA0A7H4S9U6(100,100)Download
Average pLDDT?94.12
CAZy50 ID57133
CAZy50 RepNo, QDR55779.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID244366
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella variicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYWDDEGWPR  IEGGHGGKTF  VEGPKDAIFT  ESAGDNSQQD  DFTSPALDPN  WNTLRVPFTA60
KMGTTGDGKL  TLIGQGSLAN  THDLSLIARR  WQAFYFDAAV  KVKFEPFSYQ  QMAGLTNYYN120
DRHWSFVFLT  WNEINGKVIE  VGENNRGKYT  SYLKDNAIKV  PDGVEYVWFR  TKVRKQTYSY180
EYSFDGVSFT  EIPVQLDAAV  LSDDYVLQSY  GGFFTGAFVG  LAAVDYAGYG  TQAEFYQFEY240
QELGDALAAD  GSYSWEAGET  RDK263

Predicted 3D structure by AlphaFold2 with pLDDT = 94.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM91(37-243)

MYWDDEGWPR  IEGGHGGKTF  VEGPKDAIFT  ESAGDNSQQD  DFTSPALDPN  WNTLRVPFTA60
KMGTTGDGKL  TLIGQGSLAN  THDLSLIARR  WQAFYFDAAV  KVKFEPFSYQ  QMAGLTNYYN120
DRHWSFVFLT  WNEINGKVIE  VGENNRGKYT  SYLKDNAIKV  PDGVEYVWFR  TKVRKQTYSY180
EYSFDGVSFT  EIPVQLDAAV  LSDDYVLQSY  GGFFTGAFVG  LAAVDYAGYG  TQAEFYQFEY240
QELGDALAAD  GSYSWEAGET  RDK263

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help