CAZyme3D

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Entry ID

Information for CAZyme ID: VIP01306.1

Basic Information

GenBank IDVIP01306.1
FamilyGH17
Sequence Length322
UniProt IDA0A6C2YIR7(100,100)Download
Average pLDDT?91.85
CAZy50 ID136932
CAZy50 RepNo, ADV63996.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID692036
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderGemmatales
FamilyGemmataceae
GenusTuwongella
SpeciesTuwongella immobilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRLFWLGWI  AVFGLSLGDG  SRANAQVDAR  NPLFAYLTQV  DAPKMITYTP  SELDPRQPAN60
QGRLATSSIR  KDLTALRPVF  DGLVLYGYHE  ACTPRVVALA  AELKFKAVIL  AIWDPKSTAE120
VDGVADLAKQ  FAGELAIGIL  VGNEGITFKR  YETDDIRIAA  SRLRSKLPKS  IPLSTSEPLV180
GYGNAFIAEF  GDFLAPNIHP  VFDREAFAAA  DAANWAREEA  TKLAKRTKKP  VLLKETGFPH240
GGKPAYTAQS  QAEFWTAYLK  PGRFSPGTDG  AWVFTGVAFD  SFDMPWKTQE  SGLPIEQFWG300
LFSKNREPFP  ALTSWKSAPA  RP322

Predicted 3D structure by AlphaFold2 with pLDDT = 91.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MNRLFWLGWI  AVFGLSLGDG  SRANAQVDAR  NPLFAYLTQV  DAPKMITYTP  SELDPRQPAN60
QGRLATSSIR  KDLTALRPVF  DGLVLYGYHE  ACTPRVVALA  AELKFKAVIL  AIWDPKSTAE120
VDGVADLAKQ  FAGELAIGIL  VGNEGITFKR  YETDDIRIAA  SRLRSKLPKS  IPLSTSEPLV180
GYGNAFIAEF  GDFLAPNIHP  VFDREAFAAA  DAANWAREEA  TKLAKRTKKP  VLLKETGFPH240
GGKPAYTAQS  QAEFWTAYLK  PGRFSPGTDG  AWVFTGVAFD  SFDMPWKTQE  SGLPIEQFWG300
LFSKNREPFP  ALTSWKSAPA  RP322

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help