Information for CAZyme ID: VIP01306.1
Basic Information
GenBank ID | VIP01306.1 |
Family | GH17 |
Sequence Length | 322 |
UniProt ID | A0A6C2YIR7(100,100)![]() |
Average pLDDT? | 91.85 |
CAZy50 ID | 136932 |
CAZy50 Rep | No, ADV63996.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 692036 |
Kingdom | Bacteria |
Phylum | Planctomycetota |
Class | Planctomycetia |
Order | Gemmatales |
Family | Gemmataceae |
Genus | Tuwongella |
Species | Tuwongella immobilis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MNRLFWLGWI AVFGLSLGDG SRANAQVDAR NPLFAYLTQV DAPKMITYTP SELDPRQPAN | 60 |
QGRLATSSIR KDLTALRPVF DGLVLYGYHE ACTPRVVALA AELKFKAVIL AIWDPKSTAE | 120 |
VDGVADLAKQ FAGELAIGIL VGNEGITFKR YETDDIRIAA SRLRSKLPKS IPLSTSEPLV | 180 |
GYGNAFIAEF GDFLAPNIHP VFDREAFAAA DAANWAREEA TKLAKRTKKP VLLKETGFPH | 240 |
GGKPAYTAQS QAEFWTAYLK PGRFSPGTDG AWVFTGVAFD SFDMPWKTQE SGLPIEQFWG | 300 |
LFSKNREPFP ALTSWKSAPA RP | 322 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.85 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) :
MNRLFWLGWI AVFGLSLGDG SRANAQVDAR NPLFAYLTQV DAPKMITYTP SELDPRQPAN | 60 |
QGRLATSSIR KDLTALRPVF DGLVLYGYHE ACTPRVVALA AELKFKAVIL AIWDPKSTAE | 120 |
VDGVADLAKQ FAGELAIGIL VGNEGITFKR YETDDIRIAA SRLRSKLPKS IPLSTSEPLV | 180 |
GYGNAFIAEF GDFLAPNIHP VFDREAFAAA DAANWAREEA TKLAKRTKKP VLLKETGFPH | 240 |
GGKPAYTAQS QAEFWTAYLK PGRFSPGTDG AWVFTGVAFD SFDMPWKTQE SGLPIEQFWG | 300 |
LFSKNREPFP ALTSWKSAPA RP | 322 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.