CAZyme3D

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Entry ID

Information for CAZyme ID: VEH99729.1

Basic Information

GenBank IDVEH99729.1
FamilyCBM20, GH77
Sequence Length885
UniProt IDA0A3S4UTJ5(100,100)Download
Average pLDDT?92.80
CAZy50 ID20302
CAZy50 RepNo, QBO58273.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID266748
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusKaistella
SpeciesKaistella antarctica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLYLNINFR  TKVGENVQVC  VFEDGTVEKV  HALKYTDNGN  WIAEVDYFSK  SISYKYQLVN60
EQGFILDEEF  SLHQLNFPHN  YDEFVIHDFW  NAKNFPENYL  NNKILKNKLR  GFKPEKVSVL120
KKHTHLFRLE  APIYNPNWKM  VVLGNCGALG  NWQYLNTVPM  SQTDFGIWEA  AVELPNNQMI180
QYKYGLMKID  SGEVFDVEYG  DNRWALPNAE  KNVLQIKADH  FFKFKSFEMY  HAAGVAVPVF240
ALRTENGFGV  GEFPDLKNLA  DWAAKTNLSV  LQILPINDTT  ANYTWTDSYP  YAAISVYALH300
PQYLSIEKLE  YSLSKDFLEE  FNTEKAELND  LSLIDYEKMI  AGKWKYIKAI  FETNKDQILK360
NRNFKKFIKE  NEEWLLPYSA  FCVLRDKYKT  PNFNDWKTHK  KYIAGKIAPF  FTAKSKDYEM420
SMLHAWVQYQ  LHLQLKDAID  YTHDLGISVK  GDLPIGIYRY  SVEAWTEPEL  FGMDFQAGAP480
PDQFTDLGQN  WEFPTYNWEA  MKEDGYRWWK  NRFKALEQYF  DAMRIDHILG  FFRIWRMPMS540
STQGILGYFY  PAIPVRLEEF  EARGIYFDND  RYCKPFINDQ  ILWDYFGEER  DTIHNQFMNN600
HFDGTYSFKE  EFDTQRKLAD  YFKANPQGWA  EDKLISLAAN  VLFLEEEVAG  EDSVYHPRFN660
IEKTDSYRYL  NEDEKRKLSE  LYVDYFFKRQ  DGLWYQKAME  KLPVILNATD  MLICGEDLGL720
VPESVPQVMD  RLGITALKVQ  RMPSDNIAWY  DPKHAGYMNV  VTASSHDSST  LRQWWHEDRD780
VSYRYFQQQL  GQSGTAPWDL  EPQLAEMIMK  QHLYNDAMLA  IFPIQEFLAT  DRELTNPNMD840
DERINNPAEF  PHYWRYRMHL  NVEELLNHEE  FNQKIAHWVS  DSNRI885

Predicted 3D structure by AlphaFold2 with pLDDT = 92.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(135-209)+GH77(237-877)

MKLYLNINFR  TKVGENVQVC  VFEDGTVEKV  HALKYTDNGN  WIAEVDYFSK  SISYKYQLVN60
EQGFILDEEF  SLHQLNFPHN  YDEFVIHDFW  NAKNFPENYL  NNKILKNKLR  GFKPEKVSVL120
KKHTHLFRLE  APIYNPNWKM  VVLGNCGALG  NWQYLNTVPM  SQTDFGIWEA  AVELPNNQMI180
QYKYGLMKID  SGEVFDVEYG  DNRWALPNAE  KNVLQIKADH  FFKFKSFEMY  HAAGVAVPVF240
ALRTENGFGV  GEFPDLKNLA  DWAAKTNLSV  LQILPINDTT  ANYTWTDSYP  YAAISVYALH300
PQYLSIEKLE  YSLSKDFLEE  FNTEKAELND  LSLIDYEKMI  AGKWKYIKAI  FETNKDQILK360
NRNFKKFIKE  NEEWLLPYSA  FCVLRDKYKT  PNFNDWKTHK  KYIAGKIAPF  FTAKSKDYEM420
SMLHAWVQYQ  LHLQLKDAID  YTHDLGISVK  GDLPIGIYRY  SVEAWTEPEL  FGMDFQAGAP480
PDQFTDLGQN  WEFPTYNWEA  MKEDGYRWWK  NRFKALEQYF  DAMRIDHILG  FFRIWRMPMS540
STQGILGYFY  PAIPVRLEEF  EARGIYFDND  RYCKPFINDQ  ILWDYFGEER  DTIHNQFMNN600
HFDGTYSFKE  EFDTQRKLAD  YFKANPQGWA  EDKLISLAAN  VLFLEEEVAG  EDSVYHPRFN660
IEKTDSYRYL  NEDEKRKLSE  LYVDYFFKRQ  DGLWYQKAME  KLPVILNATD  MLICGEDLGL720
VPESVPQVMD  RLGITALKVQ  RMPSDNIAWY  DPKHAGYMNV  VTASSHDSST  LRQWWHEDRD780
VSYRYFQQQL  GQSGTAPWDL  EPQLAEMIMK  QHLYNDAMLA  IFPIQEFLAT  DRELTNPNMD840
DERINNPAEF  PHYWRYRMHL  NVEELLNHEE  FNQKIAHWVS  DSNRI885

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help