Information for CAZyme ID: VEG85509.1
Basic Information
| GenBank ID | VEG85509.1 |
| Family | GT107 |
| Sequence Length | 339 |
| UniProt ID | A0A448KQ45(100,100) |
| Average pLDDT? | 91.49 |
| CAZy50 ID | 39779 |
| CAZy50 Rep | No, QOQ97702.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 28080 |
| Kingdom | Bacteria |
| Phylum | Campylobacterota |
| Class | Epsilonproteobacteria |
| Order | Campylobacterales |
| Family | Campylobacteraceae |
| Genus | Campylobacter |
| Species | Campylobacter upsaliensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MHFLNSLKEL EKFRLNDDDV FLIWGKRLEK EDLKTQIAKQ NANLKPKICF VEDGFIRSVS | 60 |
| LGSDLTRPFS LVVDSKGLYI DASKPSDLEE ILQNHNFDEE LLKRAKSLIE KLKLYKISKY | 120 |
| NTLKHDNLHF KAKTGQKIIL IPAQVEDDAS MLLGGGGLDT LQFIQKVREE NPNAHLVFKP | 180 |
| HPDVLSGNRK GLKDEKIILQ ICDEMLRHSS IHSAIEASDE VHTITSTAGF DALLRRKKVV | 240 |
| VYGTPFYAGW GLSEDRVEIK RRSRKLSLEE LVAGVLILYP LYLHPKTKNL CEVETSLDII | 300 |
| TQMQRAYFSK FYIKWGIDSR NYALRKLRRT WETMRGFKK | 339 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.49 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT107(3-308)
| MHFLNSLKEL EKFRLNDDDV FLIWGKRLEK EDLKTQIAKQ NANLKPKICF VEDGFIRSVS | 60 |
| LGSDLTRPFS LVVDSKGLYI DASKPSDLEE ILQNHNFDEE LLKRAKSLIE KLKLYKISKY | 120 |
| NTLKHDNLHF KAKTGQKIIL IPAQVEDDAS MLLGGGGLDT LQFIQKVREE NPNAHLVFKP | 180 |
| HPDVLSGNRK GLKDEKIILQ ICDEMLRHSS IHSAIEASDE VHTITSTAGF DALLRRKKVV | 240 |
| VYGTPFYAGW GLSEDRVEIK RRSRKLSLEE LVAGVLILYP LYLHPKTKNL CEVETSLDII | 300 |
| TQMQRAYFSK FYIKWGIDSR NYALRKLRRT WETMRGFKK | 339 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.