CAZyme3D

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Entry ID

Information for CAZyme ID: VEG58450.1

Basic Information

GenBank IDVEG58450.1
FamilyGH178
Sequence Length357
UniProt IDA0A448J178(100,100)Download
Average pLDDT?94.26
CAZy50 ID103838
CAZy50 RepNo, BBY26629.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1791
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycolicibacterium
SpeciesMycolicibacterium aurum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHDIPGVPGV  FTPAQCRQTA  ESIAATQEST  GAIPWSVGGH  TDPWDHVESA  MALTAAGLLE60
PARAAFEWSR  TTQRPDGTWP  IQLRNGVVED  ANSDTNFCAY  IATGVWHHVL  VTGDRRFAEA120
MWPVVASAID  FVLELQGATG  EITWARGPSG  DADEALLTGC  ASIHHSIRCA  LALADYVGAP180
QPEWEVAVGR  LGHAIAHHPE  AFVTKDRWSM  EWYYPVLCGA  LRGPRAQARI  DERWDHFVVP240
GLGIRCVDDR  PWVTGAETCE  LVMALDAIGN  RDRAHEQFGA  MHHLREEDGS  YWTGLVYSDG300
KRWPVERTTW  TGGAVILAAD  ALSGATPGSG  IFRGTDLPRG  LEGEYDCECA  TSERRER357

Predicted 3D structure by AlphaFold2 with pLDDT = 94.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MHDIPGVPGV  FTPAQCRQTA  ESIAATQEST  GAIPWSVGGH  TDPWDHVESA  MALTAAGLLE60
PARAAFEWSR  TTQRPDGTWP  IQLRNGVVED  ANSDTNFCAY  IATGVWHHVL  VTGDRRFAEA120
MWPVVASAID  FVLELQGATG  EITWARGPSG  DADEALLTGC  ASIHHSIRCA  LALADYVGAP180
QPEWEVAVGR  LGHAIAHHPE  AFVTKDRWSM  EWYYPVLCGA  LRGPRAQARI  DERWDHFVVP240
GLGIRCVDDR  PWVTGAETCE  LVMALDAIGN  RDRAHEQFGA  MHHLREEDGS  YWTGLVYSDG300
KRWPVERTTW  TGGAVILAAD  ALSGATPGSG  IFRGTDLPRG  LEGEYDCECA  TSERRER357

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help