CAZyme3D

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Entry ID

Information for CAZyme ID: VEE07193.1

Basic Information

GenBank IDVEE07193.1
FamilyGH171
Sequence Length398
UniProt IDA0A3S4MBT4(100,100)Download
Average pLDDT?91.70
CAZy50 ID73305
CAZy50 RepNo, UAB80133.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID250
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium gleum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLDFKIKNL  LLICLIFLGV  FNQYYSQTQV  QPDFKTGANQ  PEIYLPLLKN  KTIGIVTNQT60
GLMSDRTHLV  DFLVKKGIKI  NSIFAPEHGF  RGDADAGAKV  KNGVDVKTGI  PIVSLYGNNK120
KPKPEQLAGI  DIVVFDIQDV  GVRFYTYIST  LSYLMEAGAE  NNVEIMVLDR  PNPHDGYTDG180
PVLKKKWSSF  VGLHEVPVVY  GLTIGEYGKM  VNGEKWLKNG  VQAKYTLIPM  KNYHKKQRYP240
MLDKPSPNLP  NDKAINLYPS  LCFFEGTQVS  VGRGTDLPFQ  IYGSPWTENL  PYQFTPKPSY300
GAKDPFLNGK  LCYGENLSNY  PKDLRELNLE  WVIKAYKNYK  NPQQDFFLKN  LWFDTLSGTD360
ELRKQIIAGK  SIQEIKSSWK  TDLENFEKIR  TRYVVYED398

Predicted 3D structure by AlphaFold2 with pLDDT = 91.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(53-396)

MNLDFKIKNL  LLICLIFLGV  FNQYYSQTQV  QPDFKTGANQ  PEIYLPLLKN  KTIGIVTNQT60
GLMSDRTHLV  DFLVKKGIKI  NSIFAPEHGF  RGDADAGAKV  KNGVDVKTGI  PIVSLYGNNK120
KPKPEQLAGI  DIVVFDIQDV  GVRFYTYIST  LSYLMEAGAE  NNVEIMVLDR  PNPHDGYTDG180
PVLKKKWSSF  VGLHEVPVVY  GLTIGEYGKM  VNGEKWLKNG  VQAKYTLIPM  KNYHKKQRYP240
MLDKPSPNLP  NDKAINLYPS  LCFFEGTQVS  VGRGTDLPFQ  IYGSPWTENL  PYQFTPKPSY300
GAKDPFLNGK  LCYGENLSNY  PKDLRELNLE  WVIKAYKNYK  NPQQDFFLKN  LWFDTLSGTD360
ELRKQIIAGK  SIQEIKSSWK  TDLENFEKIR  TRYVVYED398

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help