CAZyme3D

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Entry ID

Information for CAZyme ID: VEA74462.1

Basic Information

GenBank IDVEA74462.1
FamilyGH8
Sequence Length304
UniProt IDA0A3S4HBN2(100,100)Download
Average pLDDT?96.11
CAZy50 ID97690
CAZy50 RepNo, AJR01156.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID59203
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFFALAANDR  PAFAQLFNWT  QNNLAQGSLR  EHLPAWLWGQ  KDPDTWSVLD  SNSASDGDIW60
MAWSLLEAGR  LWKETRYTEV  GTALLKRIAR  EEVVNVPGLG  SMLLPGKIGF  AEANSWRFNP120
SYLPPQLAQY  FSRFGAPWST  LRETNLRLLL  ETAPKGFSPD  WVRYKSKQGW  QLKAEKTLIS180
SYDAIRVYLW  AGMMHDGDPQ  KTRLLARFKP  MATLTIKNGV  PPEKVDVASG  NAQGTGPVGF240
SAALLPFLQN  RDAQAVQRQR  VADHFPGSDA  YYNYVLTLFG  QGWDQHRFAS  PSKVNYYLTG300
ARNA304

Predicted 3D structure by AlphaFold2 with pLDDT = 96.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(1-283)

MFFALAANDR  PAFAQLFNWT  QNNLAQGSLR  EHLPAWLWGQ  KDPDTWSVLD  SNSASDGDIW60
MAWSLLEAGR  LWKETRYTEV  GTALLKRIAR  EEVVNVPGLG  SMLLPGKIGF  AEANSWRFNP120
SYLPPQLAQY  FSRFGAPWST  LRETNLRLLL  ETAPKGFSPD  WVRYKSKQGW  QLKAEKTLIS180
SYDAIRVYLW  AGMMHDGDPQ  KTRLLARFKP  MATLTIKNGV  PPEKVDVASG  NAQGTGPVGF240
SAALLPFLQN  RDAQAVQRQR  VADHFPGSDA  YYNYVLTLFG  QGWDQHRFAS  PSKVNYYLTG300
ARNA304

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help