CAZyme3D

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Entry ID

Information for CAZyme ID: VDY35920.1

Basic Information

GenBank IDVDY35920.1
FamilyGH102
Sequence Length365
UniProt IDA0A3S4DBF6(100,100)Download
Average pLDDT?89.63
CAZy50 ID73963
CAZy50 RepNo, AAN81829.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID582
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusMorganella
SpeciesMorganella morganii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSKTGRYLLC  GVLFSLLVGC  ESRPTDKGQQ  YKDGHLTQNL  QEVANVNSPG  VPVNGPDFLK60
QVEAIRTTSP  RLYNQYSENF  RAVENWLRSG  ADTAQLRQFN  LHSYQMEGKD  NYGNVQFTGY120
YTPVVQARHT  RQGEFQYPIY  RMPPKKGSRL  PSRAQIYNGA  LSDNYVLAYS  NSLMDNFLMD180
VQGSAYIDFG  DGSELNFFAY  AGKNGHGYTS  IGRVLIDRGE  VEKKDMSMLA  IRQWADNHSP240
QEVQELLEQN  ASFVFFTPKQ  FAPVKGASAV  PLIAKASVAS  DKTLIPPGTT  LLAEVPVLDN300
QGNFTGRYDM  RLMIALDVGG  AIKGHHFDIY  HGIGHDAGLM  AGFYNHYGRV  WVLKKGIPPI360
LNPAL365

Predicted 3D structure by AlphaFold2 with pLDDT = 89.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(125-256)

MSKTGRYLLC  GVLFSLLVGC  ESRPTDKGQQ  YKDGHLTQNL  QEVANVNSPG  VPVNGPDFLK60
QVEAIRTTSP  RLYNQYSENF  RAVENWLRSG  ADTAQLRQFN  LHSYQMEGKD  NYGNVQFTGY120
YTPVVQARHT  RQGEFQYPIY  RMPPKKGSRL  PSRAQIYNGA  LSDNYVLAYS  NSLMDNFLMD180
VQGSAYIDFG  DGSELNFFAY  AGKNGHGYTS  IGRVLIDRGE  VEKKDMSMLA  IRQWADNHSP240
QEVQELLEQN  ASFVFFTPKQ  FAPVKGASAV  PLIAKASVAS  DKTLIPPGTT  LLAEVPVLDN300
QGNFTGRYDM  RLMIALDVGG  AIKGHHFDIY  HGIGHDAGLM  AGFYNHYGRV  WVLKKGIPPI360
LNPAL365

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help