CAZyme3D

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Entry ID

Information for CAZyme ID: VDD63000.1

Basic Information

GenBank IDVDD63000.1
FamilyGT37
Sequence Length499
UniProt IDA0A3P6GC36(100,100)Download
Average pLDDT?75.74
CAZy50 ID57501
CAZy50 RepNo, ANM58117.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3712
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica oleracea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRGKKSSDA  GEPVTNPDTR  TGSSEADAVK  PSLSSMKSMG  LLLAVLMVAS  VMFSLSVVLR60
DPPSDDVVES  VAASRVLQLR  FYQANESDGG  LSKKKDHLVP  GFDKESCLSR  YEASLYRKES120
PFKQSSYLES  RFNRYQDLHR  RCGPFTTFYS  STFDKLKLGD  RSDGGTSGCS  YVIWLHSDGE180
LGSRMLSLAS  AFLYALLTNR  VLLVEQGAEM  ADLFCEPFPC  TSWFLPSEFP  LNEQQSLLRH240
LVLDSSDQQK  LESQALFNET  PWLIMRADGY  FVPSLFSISS  FEQELEKLFP  VKETVFYFLG300
QRLFHPTNVV  WGLITRYYHA  YLARADKRIG  IHIEVSDASN  DQFQRLVEQI  LACGVRHELL360
PEVDKERHLP  SSQVISRKSK  AVFISSSSSP  GYFESIRDVY  WENPTVTGEI  LSVHRPSRKE420
YQKTQRNMES  RREWTEIYLL  SCSDVLMVTS  PWSSLVEVAH  GLGGLKPWVL  NGTDHDSFCT480
RARSMEPCSQ  TPRSHGCKH499

Predicted 3D structure by AlphaFold2 with pLDDT = 75.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT37(252-498)

MKRGKKSSDA  GEPVTNPDTR  TGSSEADAVK  PSLSSMKSMG  LLLAVLMVAS  VMFSLSVVLR60
DPPSDDVVES  VAASRVLQLR  FYQANESDGG  LSKKKDHLVP  GFDKESCLSR  YEASLYRKES120
PFKQSSYLES  RFNRYQDLHR  RCGPFTTFYS  STFDKLKLGD  RSDGGTSGCS  YVIWLHSDGE180
LGSRMLSLAS  AFLYALLTNR  VLLVEQGAEM  ADLFCEPFPC  TSWFLPSEFP  LNEQQSLLRH240
LVLDSSDQQK  LESQALFNET  PWLIMRADGY  FVPSLFSISS  FEQELEKLFP  VKETVFYFLG300
QRLFHPTNVV  WGLITRYYHA  YLARADKRIG  IHIEVSDASN  DQFQRLVEQI  LACGVRHELL360
PEVDKERHLP  SSQVISRKSK  AVFISSSSSP  GYFESIRDVY  WENPTVTGEI  LSVHRPSRKE420
YQKTQRNMES  RREWTEIYLL  SCSDVLMVTS  PWSSLVEVAH  GLGGLKPWVL  NGTDHDSFCT480
RARSMEPCSQ  TPRSHGCKH499

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help