Information for CAZyme ID: VDD55698.1
Basic Information
GenBank ID | VDD55698.1 |
Family | CE13 |
Sequence Length | 396 |
UniProt ID | A0A3P6FRU5(100,100)![]() |
Average pLDDT? | 88.78 |
CAZy50 ID | 14102 |
CAZy50 Rep | No, CAE5960459.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 3712 |
Kingdom | Eukaryota |
Phylum | Streptophyta |
Class | Magnoliopsida |
Order | Brassicales |
Family | Brassicaceae |
Genus | Brassica |
Species | Brassica oleracea |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MNALLWNWSL TGLFLLSILA DGVMGSDEMY LFNNFSGTNV FQKQDDGADV LMVGLTLVQT | 60 |
AAAEGAVCLD GSVPGYHLYR GYGSGANNWI IQLQGGAWCD SIEDCQNRKR SRVGSSTLME | 120 |
TPIEFKGILS NKAAENPDFY NWNKAVVRYC DGASFSGDSE NKTAQLQFRG KRIFLAVMED | 180 |
LIAKGMCHAK QALLNGCSSG GLAAILRCDD FSSLFPHTTK VKCMSDAGFF LDAVDISGAR | 240 |
SIRRMYSGVV NTQGLQNTLP RTCTSHLDPT SCFFPQNIIN QVKTPLFILN SAFDSWQIEN | 300 |
SIAPPSADPS GSWHNCSSSF KCNTSQMQFL EGFKMSMLDA LKTFSMSSKN GMFISSHWAH | 360 |
CLAERKDTWF PGNSQPGEDK GIAVAVGDWY FERAKK | 396 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.78 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CE13(51-394)
MNALLWNWSL TGLFLLSILA DGVMGSDEMY LFNNFSGTNV FQKQDDGADV LMVGLTLVQT | 60 |
AAAEGAVCLD GSVPGYHLYR GYGSGANNWI IQLQGGAWCD SIEDCQNRKR SRVGSSTLME | 120 |
TPIEFKGILS NKAAENPDFY NWNKAVVRYC DGASFSGDSE NKTAQLQFRG KRIFLAVMED | 180 |
LIAKGMCHAK QALLNGCSSG GLAAILRCDD FSSLFPHTTK VKCMSDAGFF LDAVDISGAR | 240 |
SIRRMYSGVV NTQGLQNTLP RTCTSHLDPT SCFFPQNIIN QVKTPLFILN SAFDSWQIEN | 300 |
SIAPPSADPS GSWHNCSSSF KCNTSQMQFL EGFKMSMLDA LKTFSMSSKN GMFISSHWAH | 360 |
CLAERKDTWF PGNSQPGEDK GIAVAVGDWY FERAKK | 396 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.