CAZyme3D

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Entry ID

Information for CAZyme ID: VDD55698.1

Basic Information

GenBank IDVDD55698.1
FamilyCE13
Sequence Length396
UniProt IDA0A3P6FRU5(100,100)Download
Average pLDDT?88.78
CAZy50 ID14102
CAZy50 RepNo, CAE5960459.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3712
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica oleracea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNALLWNWSL  TGLFLLSILA  DGVMGSDEMY  LFNNFSGTNV  FQKQDDGADV  LMVGLTLVQT60
AAAEGAVCLD  GSVPGYHLYR  GYGSGANNWI  IQLQGGAWCD  SIEDCQNRKR  SRVGSSTLME120
TPIEFKGILS  NKAAENPDFY  NWNKAVVRYC  DGASFSGDSE  NKTAQLQFRG  KRIFLAVMED180
LIAKGMCHAK  QALLNGCSSG  GLAAILRCDD  FSSLFPHTTK  VKCMSDAGFF  LDAVDISGAR240
SIRRMYSGVV  NTQGLQNTLP  RTCTSHLDPT  SCFFPQNIIN  QVKTPLFILN  SAFDSWQIEN300
SIAPPSADPS  GSWHNCSSSF  KCNTSQMQFL  EGFKMSMLDA  LKTFSMSSKN  GMFISSHWAH360
CLAERKDTWF  PGNSQPGEDK  GIAVAVGDWY  FERAKK396

Predicted 3D structure by AlphaFold2 with pLDDT = 88.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE13(51-394)

MNALLWNWSL  TGLFLLSILA  DGVMGSDEMY  LFNNFSGTNV  FQKQDDGADV  LMVGLTLVQT60
AAAEGAVCLD  GSVPGYHLYR  GYGSGANNWI  IQLQGGAWCD  SIEDCQNRKR  SRVGSSTLME120
TPIEFKGILS  NKAAENPDFY  NWNKAVVRYC  DGASFSGDSE  NKTAQLQFRG  KRIFLAVMED180
LIAKGMCHAK  QALLNGCSSG  GLAAILRCDD  FSSLFPHTTK  VKCMSDAGFF  LDAVDISGAR240
SIRRMYSGVV  NTQGLQNTLP  RTCTSHLDPT  SCFFPQNIIN  QVKTPLFILN  SAFDSWQIEN300
SIAPPSADPS  GSWHNCSSSF  KCNTSQMQFL  EGFKMSMLDA  LKTFSMSSKN  GMFISSHWAH360
CLAERKDTWF  PGNSQPGEDK  GIAVAVGDWY  FERAKK396

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help