Information for CAZyme ID: VDD43184.1
Basic Information
| GenBank ID | VDD43184.1 |
| Family | GT8 |
| Sequence Length | 757 |
| UniProt ID | A0A3P6F733(100,100) |
| Average pLDDT? | 76.50 |
| CAZy50 ID | 714 |
| CAZy50 Rep | No, CAG7899485.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 3712 |
| Kingdom | Eukaryota |
| Phylum | Streptophyta |
| Class | Magnoliopsida |
| Order | Brassicales |
| Family | Brassicaceae |
| Genus | Brassica |
| Species | Brassica oleracea |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRLPSPSPVE PRHRLSSQTD ETSKRRSLRN RDAKDLDKGG LHGSFQYRNW TGKFSTLKVV | 60 |
| LVLIVLGTVY TLYRSPAVHI ADHPSNNNSR YLLWMMESSA LDPRYVSSAE IHWDHMSDVV | 120 |
| EKLTGKSGYQ GVGFINLNDD EIAQWKDLIP DCDHVALHLG HMKSNITWES LYPEWIDEEE | 180 |
| QFEVPTCPSL PWIQVPGKPR LDLVVVKLPC NKAGKWSRDV VRLHLQLAAA RVAASSKGLH | 240 |
| DVHVLFITDC FPIPNLFIGK ELVSRQGNLW LFKPNLHQLR QKVQLPIGSC ELTVPLKAKD | 300 |
| TFYSASAKRE AYATILHSAN FYVCGAITAA QSIRMAGSTR DLVILVDDSI TEHHRSGLAA | 360 |
| AGWKIYSIQR IRNPKAEAEA YNEWNYSKFR LWQLTEYDKI IFIDADMLIL RNIDFLFEMP | 420 |
| EISATGNNAT LFNSGVMVVE PSNSTFQLLM DHINEIVSYN GGDQGYLNEV YTWWHRIPKH | 480 |
| MNFLKHFWEG DEPEIKQMKT RLFGTDPPIL YVLHYLGNKP WLCFRDYDCN WNVDILQEFA | 540 |
| SDVAHKTWWR VHDAMPENLQ KFCLLRSKQK AQLEWDRMQA EKGNYTDGHW KIKIKDKRLE | 600 |
| TCYEDFCYWE SMLWHWGDKN WTDNSTNSLS PPPALKTPLS SLATQRRAKH PHKEVGRTRQ | 660 |
| SEATYLPVDL VSDILLRLPA KSAAKFRCVS KVWSSITTQP SFITSFTARS IPHLLILSEK | 720 |
| KGKLFGFSIP QNQNLDSKPQ QQAEIYAMTY PENRSLF | 757 |
Predicted 3D structure by AlphaFold2 with pLDDT = 76.50 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT8(307-522)
| MRLPSPSPVE PRHRLSSQTD ETSKRRSLRN RDAKDLDKGG LHGSFQYRNW TGKFSTLKVV | 60 |
| LVLIVLGTVY TLYRSPAVHI ADHPSNNNSR YLLWMMESSA LDPRYVSSAE IHWDHMSDVV | 120 |
| EKLTGKSGYQ GVGFINLNDD EIAQWKDLIP DCDHVALHLG HMKSNITWES LYPEWIDEEE | 180 |
| QFEVPTCPSL PWIQVPGKPR LDLVVVKLPC NKAGKWSRDV VRLHLQLAAA RVAASSKGLH | 240 |
| DVHVLFITDC FPIPNLFIGK ELVSRQGNLW LFKPNLHQLR QKVQLPIGSC ELTVPLKAKD | 300 |
| TFYSASAKRE AYATILHSAN FYVCGAITAA QSIRMAGSTR DLVILVDDSI TEHHRSGLAA | 360 |
| AGWKIYSIQR IRNPKAEAEA YNEWNYSKFR LWQLTEYDKI IFIDADMLIL RNIDFLFEMP | 420 |
| EISATGNNAT LFNSGVMVVE PSNSTFQLLM DHINEIVSYN GGDQGYLNEV YTWWHRIPKH | 480 |
| MNFLKHFWEG DEPEIKQMKT RLFGTDPPIL YVLHYLGNKP WLCFRDYDCN WNVDILQEFA | 540 |
| SDVAHKTWWR VHDAMPENLQ KFCLLRSKQK AQLEWDRMQA EKGNYTDGHW KIKIKDKRLE | 600 |
| TCYEDFCYWE SMLWHWGDKN WTDNSTNSLS PPPALKTPLS SLATQRRAKH PHKEVGRTRQ | 660 |
| SEATYLPVDL VSDILLRLPA KSAAKFRCVS KVWSSITTQP SFITSFTARS IPHLLILSEK | 720 |
| KGKLFGFSIP QNQNLDSKPQ QQAEIYAMTY PENRSLF | 757 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.