CAZyme3D

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Entry ID

Information for CAZyme ID: VDD20059.1

Basic Information

GenBank IDVDD20059.1
FamilyGH17
Sequence Length340
UniProt IDA0A3P6DLT1(100,100)Download
Average pLDDT?93.23
CAZy50 ID30295
CAZy50 RepNo, CAE6112366.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3712
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica oleracea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNYSVFLFFL  SCIVLIFNYG  LVTTAASNVG  LNYGLLGDNL  PPPSNVITLY  KSIGITKVRI60
FDPNTEVLNA  LRGHRDIKVT  VGVRDQDLAP  LAASEDAVKA  WFATNIEPYL  ADVNIAFITV120
GNEVIPGPIG  PQVLPVMTSL  THLVKSRNLP  ISISTVVSMG  NLGQSYPPSA  GMFTSQAREQ180
LTPVLKFLSQ  TSTPILVNIY  PYFPYASDPV  NIHLDYATSK  SEAVVVQDGP  LGYSNLFDAM240
FDAFLWAMER  EGVKDLPMVV  SETGWPSAGN  GDMTTPLIAA  TYNGNFVKHV  DSGKGTPKRP300
NSGVDGFIFA  TFNENQKPPG  TEQNFGLYNP  VDMKPIYKLF  340

Predicted 3D structure by AlphaFold2 with pLDDT = 93.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(29-339)

MNYSVFLFFL  SCIVLIFNYG  LVTTAASNVG  LNYGLLGDNL  PPPSNVITLY  KSIGITKVRI60
FDPNTEVLNA  LRGHRDIKVT  VGVRDQDLAP  LAASEDAVKA  WFATNIEPYL  ADVNIAFITV120
GNEVIPGPIG  PQVLPVMTSL  THLVKSRNLP  ISISTVVSMG  NLGQSYPPSA  GMFTSQAREQ180
LTPVLKFLSQ  TSTPILVNIY  PYFPYASDPV  NIHLDYATSK  SEAVVVQDGP  LGYSNLFDAM240
FDAFLWAMER  EGVKDLPMVV  SETGWPSAGN  GDMTTPLIAA  TYNGNFVKHV  DSGKGTPKRP300
NSGVDGFIFA  TFNENQKPPG  TEQNFGLYNP  VDMKPIYKLF  340

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help