CAZyme3D

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Entry ID

Information for CAZyme ID: VDC86599.1

Basic Information

GenBank IDVDC86599.1
FamilyGT47
Sequence Length502
UniProt IDA0A3P6AAV5(100,100)Download
Average pLDDT?84.14
CAZy50 ID35153
CAZy50 RepNo, VDD19554.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3712
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica oleracea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVGKHQNHSP  RFRSKSLILT  LSLFSFSLLV  ILYTFSPSVS  YPNQTETSFV  ASLEQFLIHK60
APKLTSPFRD  DTVRVESDDD  DPRKLESMVS  ERENRLLNED  PGYPTEFPVK  VYVYEMPKKF120
TFDLLWLFHN  TYKETSNATS  NGSPVHRLIE  QHSIDYWLWA  DLISPESERR  LKSVVRVHQQ180
QDADFFYVPF  FTTISFFLLE  KQQCKALYRE  ALKWVTDQPV  WKRSEGRDHI  FPIHHPWSFK240
TVRKSVKNAI  WLLPDLDSTG  NWYKPGQVSL  EKDLVLPYVP  NVDRCDAKCL  FESAPLRNTL300
LFFRGRLKRN  AGGKIRAKLG  AELSGDKDVI  ITEGTAGEGG  KLAAQDGMRR  SLFCLCPAGD360
TPSSARLFDA  IVSGCIPVIV  SDELELPFEG  ILDYNKVAVI  VSSSDAIQPG  WLVNHLRSLV420
PSQVKEFQNS  LAQYSRHFIY  SSPAQPLGPE  DLTWRMIAGK  LVNIKLHTRR  SQRVVKGSRS480
ICRCDCWRPN  STASNPLSPL  LP502

Predicted 3D structure by AlphaFold2 with pLDDT = 84.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT47(108-418)

MVGKHQNHSP  RFRSKSLILT  LSLFSFSLLV  ILYTFSPSVS  YPNQTETSFV  ASLEQFLIHK60
APKLTSPFRD  DTVRVESDDD  DPRKLESMVS  ERENRLLNED  PGYPTEFPVK  VYVYEMPKKF120
TFDLLWLFHN  TYKETSNATS  NGSPVHRLIE  QHSIDYWLWA  DLISPESERR  LKSVVRVHQQ180
QDADFFYVPF  FTTISFFLLE  KQQCKALYRE  ALKWVTDQPV  WKRSEGRDHI  FPIHHPWSFK240
TVRKSVKNAI  WLLPDLDSTG  NWYKPGQVSL  EKDLVLPYVP  NVDRCDAKCL  FESAPLRNTL300
LFFRGRLKRN  AGGKIRAKLG  AELSGDKDVI  ITEGTAGEGG  KLAAQDGMRR  SLFCLCPAGD360
TPSSARLFDA  IVSGCIPVIV  SDELELPFEG  ILDYNKVAVI  VSSSDAIQPG  WLVNHLRSLV420
PSQVKEFQNS  LAQYSRHFIY  SSPAQPLGPE  DLTWRMIAGK  LVNIKLHTRR  SQRVVKGSRS480
ICRCDCWRPN  STASNPLSPL  LP502

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help