Information for CAZyme ID: VDC86599.1
Basic Information
| GenBank ID | VDC86599.1 |
| Family | GT47 |
| Sequence Length | 502 |
| UniProt ID | A0A3P6AAV5(100,100) |
| Average pLDDT? | 84.14 |
| CAZy50 ID | 35153 |
| CAZy50 Rep | No, VDD19554.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 3712 |
| Kingdom | Eukaryota |
| Phylum | Streptophyta |
| Class | Magnoliopsida |
| Order | Brassicales |
| Family | Brassicaceae |
| Genus | Brassica |
| Species | Brassica oleracea |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MVGKHQNHSP RFRSKSLILT LSLFSFSLLV ILYTFSPSVS YPNQTETSFV ASLEQFLIHK | 60 |
| APKLTSPFRD DTVRVESDDD DPRKLESMVS ERENRLLNED PGYPTEFPVK VYVYEMPKKF | 120 |
| TFDLLWLFHN TYKETSNATS NGSPVHRLIE QHSIDYWLWA DLISPESERR LKSVVRVHQQ | 180 |
| QDADFFYVPF FTTISFFLLE KQQCKALYRE ALKWVTDQPV WKRSEGRDHI FPIHHPWSFK | 240 |
| TVRKSVKNAI WLLPDLDSTG NWYKPGQVSL EKDLVLPYVP NVDRCDAKCL FESAPLRNTL | 300 |
| LFFRGRLKRN AGGKIRAKLG AELSGDKDVI ITEGTAGEGG KLAAQDGMRR SLFCLCPAGD | 360 |
| TPSSARLFDA IVSGCIPVIV SDELELPFEG ILDYNKVAVI VSSSDAIQPG WLVNHLRSLV | 420 |
| PSQVKEFQNS LAQYSRHFIY SSPAQPLGPE DLTWRMIAGK LVNIKLHTRR SQRVVKGSRS | 480 |
| ICRCDCWRPN STASNPLSPL LP | 502 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.14 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT47(108-418)
| MVGKHQNHSP RFRSKSLILT LSLFSFSLLV ILYTFSPSVS YPNQTETSFV ASLEQFLIHK | 60 |
| APKLTSPFRD DTVRVESDDD DPRKLESMVS ERENRLLNED PGYPTEFPVK VYVYEMPKKF | 120 |
| TFDLLWLFHN TYKETSNATS NGSPVHRLIE QHSIDYWLWA DLISPESERR LKSVVRVHQQ | 180 |
| QDADFFYVPF FTTISFFLLE KQQCKALYRE ALKWVTDQPV WKRSEGRDHI FPIHHPWSFK | 240 |
| TVRKSVKNAI WLLPDLDSTG NWYKPGQVSL EKDLVLPYVP NVDRCDAKCL FESAPLRNTL | 300 |
| LFFRGRLKRN AGGKIRAKLG AELSGDKDVI ITEGTAGEGG KLAAQDGMRR SLFCLCPAGD | 360 |
| TPSSARLFDA IVSGCIPVIV SDELELPFEG ILDYNKVAVI VSSSDAIQPG WLVNHLRSLV | 420 |
| PSQVKEFQNS LAQYSRHFIY SSPAQPLGPE DLTWRMIAGK LVNIKLHTRR SQRVVKGSRS | 480 |
| ICRCDCWRPN STASNPLSPL LP | 502 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.