CAZyme3D

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Entry ID

Information for CAZyme ID: VDC84934.1

Basic Information

GenBank IDVDC84934.1
FamilyGT4
Sequence Length519
UniProt IDA0A3P6ABU6(100,100)Download
Average pLDDT?79.19
CAZy50 ID58334
CAZy50 RepNo, BBN01770.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3712
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica oleracea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLSSSSSSS  LSINLNPTHP  HFLPSTTTTN  TCSSSFVSSP  VSLGACCPRR  SSSISLIRKK60
SQSLLISASS  GSNDMTITEA  RGEGEESEIE  APLLDPESYS  KPRRIALFVE  PSPFAYVSGY120
KNRFQNFIRY  LREMGDEVIV  VTTHEGVPEE  FYGAKVIGSR  SFPCPYYQKV  PLSLALSPRI180
ISEIARFKPD  IIHASSPGIM  VFGALAIAKM  LSVPIVMSYH  THVPVYIPRY  TFSWLVQPMW240
SIIRFLHRAA  DLTLVPSAAI  GKDLVAAGAT  AANQLRLWNK  GVDSESFNPR  FRSQEMHSFL300
VLIFNAFNGE  PEKPLVIHVG  RIGVEKSLEL  LKSVMDKLPE  ARIAFIGDGP  YREDLEKLFT360
GMPAVFTGML  QGEELSQAYA  SGDVFVMPSE  SETLGLVVLE  AMASGLPVVA  ARAGGIPDII420
PEEQEGKTGF  LFNPGDVEDC  VTKLRTLLED  SETRDIIGKA  AREETEKYDW  RAATTKIRNE480
QYGAAIWFWR  RKKAELLGPL  NWLVKRLFPV  PPEVNAIKG519

Predicted 3D structure by AlphaFold2 with pLDDT = 79.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(308-455)

MNLSSSSSSS  LSINLNPTHP  HFLPSTTTTN  TCSSSFVSSP  VSLGACCPRR  SSSISLIRKK60
SQSLLISASS  GSNDMTITEA  RGEGEESEIE  APLLDPESYS  KPRRIALFVE  PSPFAYVSGY120
KNRFQNFIRY  LREMGDEVIV  VTTHEGVPEE  FYGAKVIGSR  SFPCPYYQKV  PLSLALSPRI180
ISEIARFKPD  IIHASSPGIM  VFGALAIAKM  LSVPIVMSYH  THVPVYIPRY  TFSWLVQPMW240
SIIRFLHRAA  DLTLVPSAAI  GKDLVAAGAT  AANQLRLWNK  GVDSESFNPR  FRSQEMHSFL300
VLIFNAFNGE  PEKPLVIHVG  RIGVEKSLEL  LKSVMDKLPE  ARIAFIGDGP  YREDLEKLFT360
GMPAVFTGML  QGEELSQAYA  SGDVFVMPSE  SETLGLVVLE  AMASGLPVVA  ARAGGIPDII420
PEEQEGKTGF  LFNPGDVEDC  VTKLRTLLED  SETRDIIGKA  AREETEKYDW  RAATTKIRNE480
QYGAAIWFWR  RKKAELLGPL  NWLVKRLFPV  PPEVNAIKG519

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help