Information for CAZyme ID: VDC68933.1
Basic Information
| GenBank ID | VDC68933.1 |
| Family | GT116 |
| Sequence Length | 493 |
| UniProt ID | A0A3P5Z4E3(100,100) |
| Average pLDDT? | 79.48 |
| CAZy50 ID | 69204 |
| CAZy50 Rep | No, BAS70982.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 3711 |
| Kingdom | Eukaryota |
| Phylum | Streptophyta |
| Class | Magnoliopsida |
| Order | Brassicales |
| Family | Brassicaceae |
| Genus | Brassica |
| Species | Brassica rapa |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MGKFISITAS PPLYVRSKLL CFSLLYFFTT LSLFLYVSLS RNQCVFRYSP FDPVQTNTFS | 60 |
| YPSSYGEHKY ALPTHRSSCS SPVFFSDGYL MFLFGHYYWT VLNEIQSICS DSSSSEKLRY | 120 |
| INGNSESFGG NFSTQKRFSY FNHSDNDVEV PCGFFRDFPV SDSACILNGV IISVFVVTFE | 180 |
| SLKAEMEKCG LVVASAIFND HDKIRQPVGL GVKTLETVCF YMFIDDKTLN SLFHHNVIPR | 240 |
| NNPRDYRVGA WRIIKISKSE NLYLNPAMNG VIPKYLMHRL FPNSQFSIWI DAKIQLMIDP | 300 |
| LLLIHSMLVV PDVDMAISKH PFFVNTMEEA MATARWNKWG DVDGLRMQME TYCEHGLKPW | 360 |
| NSHKLPYPTD VPDSALILRK HGIRSDLFSC FMFNELEAFN PRDQLAFAFV RDHINPMVKM | 420 |
| NMFEVEVFEQ IVVEYRHNLK KIKTSSYEEQ EEEQKQKSLR IIQKKRRWLD YGSWSLNGSS | 480 |
| CKSYLMEMWD DHH | 493 |
Predicted 3D structure by AlphaFold2 with pLDDT = 79.48 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) :
| MGKFISITAS PPLYVRSKLL CFSLLYFFTT LSLFLYVSLS RNQCVFRYSP FDPVQTNTFS | 60 |
| YPSSYGEHKY ALPTHRSSCS SPVFFSDGYL MFLFGHYYWT VLNEIQSICS DSSSSEKLRY | 120 |
| INGNSESFGG NFSTQKRFSY FNHSDNDVEV PCGFFRDFPV SDSACILNGV IISVFVVTFE | 180 |
| SLKAEMEKCG LVVASAIFND HDKIRQPVGL GVKTLETVCF YMFIDDKTLN SLFHHNVIPR | 240 |
| NNPRDYRVGA WRIIKISKSE NLYLNPAMNG VIPKYLMHRL FPNSQFSIWI DAKIQLMIDP | 300 |
| LLLIHSMLVV PDVDMAISKH PFFVNTMEEA MATARWNKWG DVDGLRMQME TYCEHGLKPW | 360 |
| NSHKLPYPTD VPDSALILRK HGIRSDLFSC FMFNELEAFN PRDQLAFAFV RDHINPMVKM | 420 |
| NMFEVEVFEQ IVVEYRHNLK KIKTSSYEEQ EEEQKQKSLR IIQKKRRWLD YGSWSLNGSS | 480 |
| CKSYLMEMWD DHH | 493 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.