CAZyme3D

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Entry ID

Information for CAZyme ID: VBB71339.1

Basic Information

GenBank IDVBB71339.1
FamilyAA3_2
Sequence Length613
UniProt IDA0A447BR17(100,100)Download
Average pLDDT?87.03
CAZy50 ID49125
CAZy50 RepNo, VBB78527.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID48703
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderSordariales
FamilyPodosporaceae
GenusPodospora
SpeciesPodospora comata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLCGVIQVS  CFAGFFPASI  QAIKETYDYV  IVGGGTAGLT  VGDRLSESGK  HSVLVIEYGY60
LEPDGQRPGT  LYNITSAPVA  GLNNRTFPVS  IGCVVGGSSA  VNGMVFQRGN  AKDYDVWGEL120
GGGNPRVRWN  WVDMLKYFKK  SIQMTAPKPE  TAAFDLRYDT  KYWGRNLTTN  HTIFATFGNQ180
LNSSLLSDAF  YEAAKRLSGM  KVSPDAGSGQ  LGLQYYQTST  NPYTGERSYS  RTGHWDGLSR240
ANYDLLTATR  VNKIVFDHHR  AAGVQIYPRG  ESSKKTTIRA  RKEVILAAGA  IHTPQILQLS300
GIGPADLLKH  AGIPVEVDLP  GVGYNFQDHT  FIPAVSFSWL  TSPPIPEHLN  ITVVDDGLGR360
TSLGLSVELP  VVSPGSFKRI  ASKYESQDPA  TYLPKGTDRT  IIRGYRKQQQ  IYAREMRAKD420
FSFLRATFSG  DPSFVPIIIH  PVSRGTVLID  PAAGSDIEVE  PIVNYRAASN  PIDVDVAVEE480
IKFLRRFMTT  GELSRYNATE  VVPGPGYESD  EALGAWVRAN  TIPSVYHPVG  TAAKMPREWG540
GVVGEDLMVY  GVRGLSVVDA  SMMPTIVAST  TSMTVYAVAE  KVRIDLDFFL  VNLQADKREQ600
AADLIKLRAG  TIV613

Predicted 3D structure by AlphaFold2 with pLDDT = 87.03 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(26-582)

MRLCGVIQVS  CFAGFFPASI  QAIKETYDYV  IVGGGTAGLT  VGDRLSESGK  HSVLVIEYGY60
LEPDGQRPGT  LYNITSAPVA  GLNNRTFPVS  IGCVVGGSSA  VNGMVFQRGN  AKDYDVWGEL120
GGGNPRVRWN  WVDMLKYFKK  SIQMTAPKPE  TAAFDLRYDT  KYWGRNLTTN  HTIFATFGNQ180
LNSSLLSDAF  YEAAKRLSGM  KVSPDAGSGQ  LGLQYYQTST  NPYTGERSYS  RTGHWDGLSR240
ANYDLLTATR  VNKIVFDHHR  AAGVQIYPRG  ESSKKTTIRA  RKEVILAAGA  IHTPQILQLS300
GIGPADLLKH  AGIPVEVDLP  GVGYNFQDHT  FIPAVSFSWL  TSPPIPEHLN  ITVVDDGLGR360
TSLGLSVELP  VVSPGSFKRI  ASKYESQDPA  TYLPKGTDRT  IIRGYRKQQQ  IYAREMRAKD420
FSFLRATFSG  DPSFVPIIIH  PVSRGTVLID  PAAGSDIEVE  PIVNYRAASN  PIDVDVAVEE480
IKFLRRFMTT  GELSRYNATE  VVPGPGYESD  EALGAWVRAN  TIPSVYHPVG  TAAKMPREWG540
GVVGEDLMVY  GVRGLSVVDA  SMMPTIVAST  TSMTVYAVAE  KVRIDLDFFL  VNLQADKREQ600
AADLIKLRAG  TIV613

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help