CAZyme3D

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Entry ID

Information for CAZyme ID: UXU80565.1

Basic Information

GenBank IDUXU80565.1
FamilyCE2
Sequence Length387
UniProt IDA0A7X2NVX6(100,100)Download
Average pLDDT?92.12
CAZy50 ID107257
CAZy50 RepNo, UXU74670.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2654280
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus sp. SMMA_5_TC

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRDSKIGKLG  LALAAVLMIG  AAVWIATRPA  RPQVPVPMLS  VPADAGFRAE  LVPWQAELTP60
LPARIGGPVA  AASDGGLLHE  WPGITLQAEF  SGTAINLRLD  DSENRWRVEI  DDSTIELSRP120
GRQELHVHDL  QPGAHRITVQ  KLGESAAASE  LSGLYLPPGT  KPLPAPPARA  ELVEFIGDSD180
TVGFGNTAAI  RSCTGEEIFA  ATDTTRAYPA  LVAKAMGADL  RIYARSGIGL  LRNYGGGGTV240
MPQLYPHPLP  SQRAIPELPH  QAANVIVIAL  GSNDFGSPLP  PGEAWSNKAE  LAADFAPALV300
RLAQQALARS  PSARLVLLAF  GEYGPELIEA  HEIAARDLRA  TGVPVQVVKL  GKLRRNACLW360
HPSLADHQAI  ARQLLAALAP  DMQLQPD387

Predicted 3D structure by AlphaFold2 with pLDDT = 92.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(173-377)

MRDSKIGKLG  LALAAVLMIG  AAVWIATRPA  RPQVPVPMLS  VPADAGFRAE  LVPWQAELTP60
LPARIGGPVA  AASDGGLLHE  WPGITLQAEF  SGTAINLRLD  DSENRWRVEI  DDSTIELSRP120
GRQELHVHDL  QPGAHRITVQ  KLGESAAASE  LSGLYLPPGT  KPLPAPPARA  ELVEFIGDSD180
TVGFGNTAAI  RSCTGEEIFA  ATDTTRAYPA  LVAKAMGADL  RIYARSGIGL  LRNYGGGGTV240
MPQLYPHPLP  SQRAIPELPH  QAANVIVIAL  GSNDFGSPLP  PGEAWSNKAE  LAADFAPALV300
RLAQQALARS  PSARLVLLAF  GEYGPELIEA  HEIAARDLRA  TGVPVQVVKL  GKLRRNACLW360
HPSLADHQAI  ARQLLAALAP  DMQLQPD387

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help