CAZyme3D

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Entry ID

Information for CAZyme ID: UVP86715.1

Basic Information

GenBank IDUVP86715.1
FamilyGH43_26
Sequence Length368
UniProt IDA0A0K6BNV7(100,100)Download
Average pLDDT?90.79
CAZy50 ID16396
CAZy50 RepNo, QDO68467.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID817
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTKIYLLFI  TTLFFCAGCG  NKSGGQKQES  VSAAKDTYVN  PLFPEGADPS  ALFHNGKYYY60
THGTEDKIML  WETSDITDMA  HAVCKIVWKP  QDPSNSCHLW  APEIHYINDK  WYIYYAADDG120
NTDNHQLYVL  ENSSPDPMEG  KFEMKGSIIT  NPEWNWGIQA  TTFEHKGVRY  LAWSGWPKRR180
TNAETQCIYI  ARMKDPWTLD  SPRVLISKPE  YEWERQWVNP  DGSRTAYPIY  VNEGPQFFHS240
KDNKTLILYY  AASGSWSPYY  CVGMLTADAE  SDLLDPASWT  KSSVPVFQQS  LENEVYGPGG300
LSFVPSPDGT  EWYMIYHARQ  VTNGDTGSPE  TRNPRIQKIG  WDAHGMPDLG  IPVRAGVALP360
KPSGTLLK368

Predicted 3D structure by AlphaFold2 with pLDDT = 90.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_26(38-347)

MKTKIYLLFI  TTLFFCAGCG  NKSGGQKQES  VSAAKDTYVN  PLFPEGADPS  ALFHNGKYYY60
THGTEDKIML  WETSDITDMA  HAVCKIVWKP  QDPSNSCHLW  APEIHYINDK  WYIYYAADDG120
NTDNHQLYVL  ENSSPDPMEG  KFEMKGSIIT  NPEWNWGIQA  TTFEHKGVRY  LAWSGWPKRR180
TNAETQCIYI  ARMKDPWTLD  SPRVLISKPE  YEWERQWVNP  DGSRTAYPIY  VNEGPQFFHS240
KDNKTLILYY  AASGSWSPYY  CVGMLTADAE  SDLLDPASWT  KSSVPVFQQS  LENEVYGPGG300
LSFVPSPDGT  EWYMIYHARQ  VTNGDTGSPE  TRNPRIQKIG  WDAHGMPDLG  IPVRAGVALP360
KPSGTLLK368

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help