CAZyme3D

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Entry ID

Information for CAZyme ID: UVO91482.1

Basic Information

GenBank IDUVO91482.1
FamilyGH133
Sequence Length646
UniProt IDA0A0K6BR36(100,100)Download
Average pLDDT?96.50
CAZy50 ID43985
CAZy50 RepNo, ALJ24891.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID817
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSYLHFDKTL  MINLEESLPR  EILRTNKSGA  YHCTTIVDCN  TRKYHGLLVI  PVPNLDDENH60
VLLSSLDETV  IQHGAEFNLG  LHKYQGNHFS  PNGHKYIREF  DCEHIPATTY  RVGGVILRKE120
KIFVHHENRI  LIRYTLVDAH  SATTLRFRPF  LAFRSVREYT  HENSQASRDY  QLVENGIKTC180
MYPGYPELFM  QLNKKNEFHY  EPNWYRGIEY  PKEQERGYDF  NEDLYVPGYF  EVDIKKGESI240
IFSAGISEIS  PRRLKQTFEA  EVADRTPRDS  FYHCLKNSAH  QFHNKQEEDH  YILAGYPWFK300
CRARDMFVSL  PGLTLAVDEI  GEFEDVMETA  RKAINNYIKG  EPIGCKIYEM  DDPDVLLWAV360
WALQQYAKET  SREQCRAKYG  SLLEEIIDFI  RQRKHDNLFL  HENGLLYANG  ADRAITWMNS420
TVNGRPVIPR  TGYIVEINAL  WYNALRFIAD  LVREGGNGLL  ADSLDAQAEV  TGKSFVEVFR480
NEYGYLLDYV  DGNMMDWSVR  PNMIFTVAFD  YSPLDRVQKK  QVLDIVTKEL  LTPKGLRTLS540
PKSGGYNPNY  VGPQIQRDYA  YHQGTAWPWL  MGFYMEAYLR  IYKMSGISFV  ERQLIGLEDE600
MTSHCVGSLP  ELFDGNPPFK  GRGAVSFAMN  VAEILRILKL  LSKYNL646

Predicted 3D structure by AlphaFold2 with pLDDT = 96.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH133(285-636)

MSYLHFDKTL  MINLEESLPR  EILRTNKSGA  YHCTTIVDCN  TRKYHGLLVI  PVPNLDDENH60
VLLSSLDETV  IQHGAEFNLG  LHKYQGNHFS  PNGHKYIREF  DCEHIPATTY  RVGGVILRKE120
KIFVHHENRI  LIRYTLVDAH  SATTLRFRPF  LAFRSVREYT  HENSQASRDY  QLVENGIKTC180
MYPGYPELFM  QLNKKNEFHY  EPNWYRGIEY  PKEQERGYDF  NEDLYVPGYF  EVDIKKGESI240
IFSAGISEIS  PRRLKQTFEA  EVADRTPRDS  FYHCLKNSAH  QFHNKQEEDH  YILAGYPWFK300
CRARDMFVSL  PGLTLAVDEI  GEFEDVMETA  RKAINNYIKG  EPIGCKIYEM  DDPDVLLWAV360
WALQQYAKET  SREQCRAKYG  SLLEEIIDFI  RQRKHDNLFL  HENGLLYANG  ADRAITWMNS420
TVNGRPVIPR  TGYIVEINAL  WYNALRFIAD  LVREGGNGLL  ADSLDAQAEV  TGKSFVEVFR480
NEYGYLLDYV  DGNMMDWSVR  PNMIFTVAFD  YSPLDRVQKK  QVLDIVTKEL  LTPKGLRTLS540
PKSGGYNPNY  VGPQIQRDYA  YHQGTAWPWL  MGFYMEAYLR  IYKMSGISFV  ERQLIGLEDE600
MTSHCVGSLP  ELFDGNPPFK  GRGAVSFAMN  VAEILRILKL  LSKYNL646

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help