CAZyme3D

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Entry ID

Information for CAZyme ID: SVE80272.1

Basic Information

GenBank IDSVE80272.1
FamilyGT31
Sequence Length331
UniProt IDA0A4Y7MJQ5(100,100)Download
Average pLDDT?87.53
CAZy50 ID77339
CAZy50 RepNo, SVE92541.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID35525
KingdomEukaryota
PhylumArthropoda
ClassBranchiopoda
OrderDiplostraca
FamilyDaphniidae
GenusDaphnia
SpeciesDaphnia magna

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARAWRQSKN  RIVKNVFCFG  CLFVLPLLVL  AVVVYSKSKN  AEYLSVPSEL  SSQKSDDSPQ60
KQFYLIVLIM  SDPTKSATRK  AVRDTWLSNT  HKDVKHFFVV  GSKGLAQDVL  QNVLEENSSY120
HDMVILESIN  ESYSSLTGKI  LVGFQWLHSN  HNFSFLLKCD  DDSFVRMSPL  IEQLHNQPQK180
HLYWGFFKGG  SNVFQKGKWK  ENDWFLCDTY  LPYALGGGYI  LSSDLVEFIA  KNAPFLQQYK240
SEDVSVGVWL  SPLKIHRVHD  VRFDTEFKSR  GCYNKYLITH  KQSANQMREK  HANLVKTGKL300
CQSELRVRYS  YNYNWTVLPS  KCCKNFDPEL  P331

Predicted 3D structure by AlphaFold2 with pLDDT = 87.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT31(78-259)

MARAWRQSKN  RIVKNVFCFG  CLFVLPLLVL  AVVVYSKSKN  AEYLSVPSEL  SSQKSDDSPQ60
KQFYLIVLIM  SDPTKSATRK  AVRDTWLSNT  HKDVKHFFVV  GSKGLAQDVL  QNVLEENSSY120
HDMVILESIN  ESYSSLTGKI  LVGFQWLHSN  HNFSFLLKCD  DDSFVRMSPL  IEQLHNQPQK180
HLYWGFFKGG  SNVFQKGKWK  ENDWFLCDTY  LPYALGGGYI  LSSDLVEFIA  KNAPFLQQYK240
SEDVSVGVWL  SPLKIHRVHD  VRFDTEFKSR  GCYNKYLITH  KQSANQMREK  HANLVKTGKL300
CQSELRVRYS  YNYNWTVLPS  KCCKNFDPEL  P331

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help