CAZyme3D

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Entry ID

Information for CAZyme ID: SVE79064.1

Basic Information

GenBank IDSVE79064.1
FamilyGT2
Sequence Length446
UniProt IDA0A4Y7MEB6(100,100)Download
Average pLDDT?71.88
CAZy50 ID72097
CAZy50 RepNo, SVE91342.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID42856
KingdomEukaryota
PhylumArthropoda
ClassBranchiopoda
OrderDiplostraca
FamilyDaphniidae
GenusDaphnia
SpeciesDaphnia lumholtzi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLLGLLLVL  GCATLMMLLF  IYLTSETYAK  VIRFKDEQFY  LDPKTAEKHR  FPSIEDESTI60
WLSVIVPAYN  EEKRLPVMLE  ECLDYLERKL  KSNPSCTFEV  LIVDDGSNDR  TTEVGLSYSK120
KYGCDKVRVL  TLSPNRGKGG  AVRLGMLSAR  GKQLLFADAD  GATTFEDISK  LQHNLEELVK180
DQPMDKTLGL  VCGSRAHLEK  EAIASRSFFR  TVLMKGFHLL  VWLFAARSVR  DTQCGFKLLT240
RPTARLCFPN  LHIERWAFDV  ELIYIAEYMK  IPTGEVSVRW  MEIEGKLITP  DISSLSLQRE300
LFCADYRYFV  NSCHKISVTE  EEKNDQKKFK  KKPDNEPIED  ILEDEKSEKK  KKKKKKNKDD360
EAEAEAEAPQ  APERSEEANE  EHDDKKNKKD  KSKKKVDPKK  EKKGGPGKKA  LAAMQETLRK420
IKVKITKKML  LVQILNACLL  RKRKNV446

Predicted 3D structure by AlphaFold2 with pLDDT = 71.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(63-178)

MLLLGLLLVL  GCATLMMLLF  IYLTSETYAK  VIRFKDEQFY  LDPKTAEKHR  FPSIEDESTI60
WLSVIVPAYN  EEKRLPVMLE  ECLDYLERKL  KSNPSCTFEV  LIVDDGSNDR  TTEVGLSYSK120
KYGCDKVRVL  TLSPNRGKGG  AVRLGMLSAR  GKQLLFADAD  GATTFEDISK  LQHNLEELVK180
DQPMDKTLGL  VCGSRAHLEK  EAIASRSFFR  TVLMKGFHLL  VWLFAARSVR  DTQCGFKLLT240
RPTARLCFPN  LHIERWAFDV  ELIYIAEYMK  IPTGEVSVRW  MEIEGKLITP  DISSLSLQRE300
LFCADYRYFV  NSCHKISVTE  EEKNDQKKFK  KKPDNEPIED  ILEDEKSEKK  KKKKKKNKDD360
EAEAEAEAPQ  APERSEEANE  EHDDKKNKKD  KSKKKVDPKK  EKKGGPGKKA  LAAMQETLRK420
IKVKITKKML  LVQILNACLL  RKRKNV446

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help