CAZyme3D

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Entry ID

Information for CAZyme ID: SVE78871.1

Basic Information

GenBank IDSVE78871.1
FamilyGT13
Sequence Length453
UniProt IDA0A4Y7MDX0(100,100)Download
Average pLDDT?87.56
CAZy50 ID75295
CAZy50 RepNo, SVE94248.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID42856
KingdomEukaryota
PhylumArthropoda
ClassBranchiopoda
OrderDiplostraca
FamilyDaphniidae
GenusDaphnia
SpeciesDaphnia lumholtzi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKYKRLGFIV  AFCFVSWIVL  AFVIFNDNLA  KKNDVENRKG  SLLKYIKELE  LQISQQEQIY60
KLLADRFKKF  TSRPENVVQD  MELKFISDHD  PTAPSLTIRQ  DVLQEKSVML  PVLVFSCNRP120
DIRRSLDGLL  KYRPDAKKFP  IIVSQDCAHS  ATAKVIRSYS  DASQVTYIQQ  PDLSEPIVPP180
GEAKFKGYFK  IARHYLFGLK  QIFRTFNYTA  VIIVEDDLDV  APDFFSYFAS  TYQLLKNDPS240
LWCVSAWNDN  GKATLVDMQQ  GNELLYRSDF  FPGLGWMITK  QLWDELEPKW  PKSYWDDWMR300
RPEQRKDRAC  IRPEISRTRT  FGKIGVSNGM  FFDKHLKYIK  LNELPVDFSK  QNLSHMVQTA360
YDADYIRLVY  SLPVVSASDV  RTNTNLPFDG  PVRITYHTKD  TFKNAAKLLG  LMDDFKSGVP420
RTGYHGIVSV  FLNGRRVYLA  PHSNWKGYDL  TWS453

Predicted 3D structure by AlphaFold2 with pLDDT = 87.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT13(30-446)

MKYKRLGFIV  AFCFVSWIVL  AFVIFNDNLA  KKNDVENRKG  SLLKYIKELE  LQISQQEQIY60
KLLADRFKKF  TSRPENVVQD  MELKFISDHD  PTAPSLTIRQ  DVLQEKSVML  PVLVFSCNRP120
DIRRSLDGLL  KYRPDAKKFP  IIVSQDCAHS  ATAKVIRSYS  DASQVTYIQQ  PDLSEPIVPP180
GEAKFKGYFK  IARHYLFGLK  QIFRTFNYTA  VIIVEDDLDV  APDFFSYFAS  TYQLLKNDPS240
LWCVSAWNDN  GKATLVDMQQ  GNELLYRSDF  FPGLGWMITK  QLWDELEPKW  PKSYWDDWMR300
RPEQRKDRAC  IRPEISRTRT  FGKIGVSNGM  FFDKHLKYIK  LNELPVDFSK  QNLSHMVQTA360
YDADYIRLVY  SLPVVSASDV  RTNTNLPFDG  PVRITYHTKD  TFKNAAKLLG  LMDDFKSGVP420
RTGYHGIVSV  FLNGRRVYLA  PHSNWKGYDL  TWS453

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help